Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2904

Experiment: Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%
3,003,741	+	pcnB2	DVU2903	0.61	+0.6
3,003,752	+	pcnB2	DVU2903	0.62	+0.5
3,003,758	-	pcnB2	DVU2903	0.62	+1.1
3,003,770	-	pcnB2	DVU2903	0.63	+0.9
3,004,005	+	pcnB2	DVU2903	0.81	+0.8
3,004,013	-	pcnB2	DVU2903	0.81	+1.0
3,004,013	-	pcnB2	DVU2903	0.81	+0.9
3,004,129	+				+1.0
3,004,173	+				-0.3
3,004,173	+				-0.4
3,004,176	-				+0.5
3,004,196	-				+0.5
3,004,287	+				+0.1
3,004,305	-				+0.9
3,004,337	+				+0.3
3,004,346	-				+0.4
3,004,545	+				-0.3
3,004,545	+				+0.0
3,004,566	+				-0.2
3,004,592	+				-1.9
3,004,600	+				-0.6
3,004,608	-				+0.0
3,004,608	-				-0.2
3,004,619	+				+0.4
3,004,722	+				-1.0
3,004,725	-				+0.5
3,004,730	+				-0.1
3,004,783	+				-0.3
3,004,791	-				-0.4
3,004,931	+		DVU2904	0.18	+0.7
3,004,939	-		DVU2904	0.19	-0.3
3,004,941	+		DVU2904	0.19	-0.9
3,004,941	+		DVU2904	0.19	-0.8
3,004,949	-		DVU2904	0.20	-1.1
3,005,083	-		DVU2904	0.32	-2.0
3,005,094	+		DVU2904	0.33	+0.3
3,005,095	-		DVU2904	0.33	-0.2
3,005,095	-		DVU2904	0.33	-0.2
3,005,137	-		DVU2904	0.37	-2.1
3,005,211	-		DVU2904	0.44	-0.2
3,005,219	+		DVU2904	0.44	-0.3
3,005,258	+		DVU2904	0.48	-0.3
3,005,349	+		DVU2904	0.56	-0.0
3,005,405	-		DVU2904	0.61	-0.2
3,005,441	+		DVU2904	0.65	-0.2
3,005,449	-		DVU2904	0.65	+0.0
3,005,456	+		DVU2904	0.66	-0.4
3,005,522	-		DVU2904	0.72	+0.0
3,005,538	-		DVU2904	0.73	+1.1
3,005,569	+		DVU2904	0.76	-1.1
3,005,587	-		DVU2904	0.78	-0.4
3,005,617	-		DVU2904	0.81	+0.4
3,005,736	+				+0.3
3,005,744	+				+0.1
3,005,765	+				+0.2
3,005,773	-				-0.3
3,005,773	-				-0.1
3,005,862	+				-0.4
3,005,862	+				-0.9
3,005,901	+				+0.3
3,005,987	-				-0.7
3,006,024	+				-1.0
3,006,070	+				-0.6
3,006,075	+				-0.6
3,006,083	-				+0.0
3,006,083	-				-0.5
3,006,083	-				+0.9
3,006,183	-				-0.1
3,006,218	-				+1.0
3,006,266	-		DVU2905	0.12	+0.3
3,006,315	+		DVU2905	0.16	-0.2
3,006,370	+		DVU2905	0.21	+0.1
3,006,400	+		DVU2905	0.24	-0.0
3,006,408	-		DVU2905	0.24	-0.3
3,006,481	+		DVU2905	0.30	-0.9
3,006,489	-		DVU2905	0.31	-0.3
3,006,513	-		DVU2905	0.33	+0.3
3,006,548	+		DVU2905	0.36	-2.0
3,006,556	-		DVU2905	0.37	+0.3
3,006,571	-		DVU2905	0.38	-1.3
3,006,676	+		DVU2905	0.47	+3.4
3,006,684	+		DVU2905	0.48	-0.4
3,006,729	+		DVU2905	0.51	+1.0
3,006,729	+		DVU2905	0.51	+0.1
3,006,729	+		DVU2905	0.51	+0.1
3,006,737	-		DVU2905	0.52	-0.4