Experiment: Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt stfE and DVU2850 overlap by 8 nucleotides DVU2850 and DVU2851 are separated by 8 nucleotides DVU2851 and DVU2852 are separated by 8 nucleotides DVU2852 and DVU2853 are separated by 1 nucleotides
DVU2849: stfE - tail fiber protein, putative (TIGR), at 2,950,331 to 2,951,146
stfE
DVU2850: DVU2850 - tail protein, putative (TIGR), at 2,951,139 to 2,951,765
DVU2850
DVU2851: DVU2851 - tail protein, putative (TIGR), at 2,951,774 to 2,952,835
DVU2851
DVU2852: DVU2852 - tail protein, putative (TIGR), at 2,952,844 to 2,953,320
DVU2852
DVU2853: DVU2853 - phage baseplate assembly protein V, putative (TIGR), at 2,953,322 to 2,953,960
DVU2853
Position (kb)
2951
2952
2953 Strain fitness (log2 ratio)
-2
-1
0
1 at 2951.019 kb on + strand, within stfE at 2951.034 kb on - strand, within stfE at 2951.040 kb on + strand, within stfE at 2951.416 kb on + strand, within DVU2850 at 2951.443 kb on + strand, within DVU2850 at 2951.472 kb on + strand, within DVU2850 at 2951.652 kb on - strand, within DVU2850 at 2951.779 kb on - strand at 2951.779 kb on - strand at 2951.846 kb on + strand at 2952.191 kb on - strand, within DVU2851 at 2952.191 kb on - strand, within DVU2851 at 2952.359 kb on + strand, within DVU2851 at 2952.540 kb on + strand, within DVU2851 at 2952.540 kb on + strand, within DVU2851 at 2952.543 kb on - strand, within DVU2851 at 2952.543 kb on - strand, within DVU2851 at 2952.548 kb on - strand, within DVU2851 at 2952.603 kb on + strand, within DVU2851 at 2952.900 kb on + strand, within DVU2852 at 2952.972 kb on + strand, within DVU2852 at 2952.972 kb on + strand, within DVU2852 at 2952.980 kb on - strand, within DVU2852 at 2953.222 kb on + strand, within DVU2852 at 2953.270 kb on - strand, within DVU2852 at 2953.499 kb on - strand, within DVU2853 at 2953.505 kb on + strand, within DVU2853 at 2953.646 kb on + strand, within DVU2853 at 2953.655 kb on - strand, within DVU2853 at 2953.655 kb on - strand, within DVU2853
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2% remove 2,951,019 + stfE DVU2849 0.84 +0.0 2,951,034 - stfE DVU2849 0.86 -0.1 2,951,040 + stfE DVU2849 0.87 +0.9 2,951,416 + DVU2850 0.44 +0.7 2,951,443 + DVU2850 0.48 -0.9 2,951,472 + DVU2850 0.53 -0.4 2,951,652 - DVU2850 0.82 -0.1 2,951,779 - +0.3 2,951,779 - -0.3 2,951,846 + +0.5 2,952,191 - DVU2851 0.39 -1.9 2,952,191 - DVU2851 0.39 -1.8 2,952,359 + DVU2851 0.55 -0.4 2,952,540 + DVU2851 0.72 +0.7 2,952,540 + DVU2851 0.72 -0.1 2,952,543 - DVU2851 0.72 -0.0 2,952,543 - DVU2851 0.72 -1.5 2,952,548 - DVU2851 0.73 -0.5 2,952,603 + DVU2851 0.78 -1.8 2,952,900 + DVU2852 0.12 +0.4 2,952,972 + DVU2852 0.27 +1.0 2,952,972 + DVU2852 0.27 +0.1 2,952,980 - DVU2852 0.29 -0.4 2,953,222 + DVU2852 0.79 -0.1 2,953,270 - DVU2852 0.89 -0.3 2,953,499 - DVU2853 0.28 -0.1 2,953,505 + DVU2853 0.29 -0.1 2,953,646 + DVU2853 0.51 -0.0 2,953,655 - DVU2853 0.52 -0.1 2,953,655 - DVU2853 0.52 -0.0
Or see this region's nucleotide sequence