Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0703
Experiment: Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2% |
---|---|---|---|---|---|
remove | |||||
781,193 | + | -0.0 | |||
781,230 | + | -0.2 | |||
781,238 | - | +0.2 | |||
781,330 | + | +1.3 | |||
781,389 | - | +0.1 | |||
781,391 | + | +0.0 | |||
781,399 | - | +1.2 | |||
781,463 | + | +0.1 | |||
781,677 | + | DVU0702 | 0.25 | -0.5 | |
781,737 | - | DVU0702 | 0.38 | +0.3 | |
781,737 | - | DVU0702 | 0.38 | +0.1 | |
781,867 | + | DVU0702 | 0.67 | +0.2 | |
781,916 | + | DVU0702 | 0.78 | +0.2 | |
781,934 | + | DVU0702 | 0.82 | +0.1 | |
781,944 | - | DVU0702 | 0.85 | +0.1 | |
781,953 | + | DVU0702 | 0.87 | +0.5 | |
781,994 | - | -0.3 | |||
782,006 | + | -1.1 | |||
782,363 | + | +0.9 | |||
782,608 | + | lepA | DVU0703 | 0.23 | -0.1 |
782,768 | + | lepA | DVU0703 | 0.32 | +1.1 |
782,880 | + | lepA | DVU0703 | 0.38 | +1.3 |
783,058 | + | lepA | DVU0703 | 0.48 | +1.6 |
783,133 | - | lepA | DVU0703 | 0.52 | -1.1 |
783,616 | - | lepA | DVU0703 | 0.79 | +0.2 |
783,941 | + | -0.3 | |||
784,800 | - | -1.7 | |||
784,945 | + | +0.3 | |||
784,945 | + | +0.9 | |||
784,945 | + | -0.0 | |||
784,975 | + | -0.8 | |||
784,983 | - | -0.3 | |||
784,983 | - | +0.2 |
Or see this region's nucleotide sequence