Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0703

Experiment: Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0702 and lepA are separated by 177 nucleotideslepA and lepB are separated by 46 nucleotides DVU0702: DVU0702 - cytochrome c family protein (TIGR), at 781,566 to 782,012 DVU0702 DVU0703: lepA - GTP-binding protein LepA (TIGR), at 782,190 to 783,995 lepA DVU0704: lepB - signal peptidase I (TIGR), at 784,042 to 784,641 lepB Position (kb) 782 783 784Strain fitness (log2 ratio) -1 0 1at 781.193 kb on + strandat 781.230 kb on + strandat 781.238 kb on - strandat 781.330 kb on + strandat 781.389 kb on - strandat 781.391 kb on + strandat 781.399 kb on - strandat 781.463 kb on + strandat 781.677 kb on + strand, within DVU0702at 781.737 kb on - strand, within DVU0702at 781.737 kb on - strand, within DVU0702at 781.867 kb on + strand, within DVU0702at 781.916 kb on + strand, within DVU0702at 781.934 kb on + strand, within DVU0702at 781.944 kb on - strand, within DVU0702at 781.953 kb on + strand, within DVU0702at 781.994 kb on - strandat 782.006 kb on + strandat 782.363 kb on + strandat 782.608 kb on + strand, within lepAat 782.768 kb on + strand, within lepAat 782.880 kb on + strand, within lepAat 783.058 kb on + strand, within lepAat 783.133 kb on - strand, within lepAat 783.616 kb on - strand, within lepAat 783.941 kb on + strandat 784.800 kb on - strandat 784.945 kb on + strandat 784.945 kb on + strandat 784.945 kb on + strandat 784.975 kb on + strandat 784.983 kb on - strandat 784.983 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%
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781,193 + -0.0
781,230 + -0.2
781,238 - +0.2
781,330 + +1.3
781,389 - +0.1
781,391 + +0.0
781,399 - +1.2
781,463 + +0.1
781,677 + DVU0702 0.25 -0.5
781,737 - DVU0702 0.38 +0.3
781,737 - DVU0702 0.38 +0.1
781,867 + DVU0702 0.67 +0.2
781,916 + DVU0702 0.78 +0.2
781,934 + DVU0702 0.82 +0.1
781,944 - DVU0702 0.85 +0.1
781,953 + DVU0702 0.87 +0.5
781,994 - -0.3
782,006 + -1.1
782,363 + +0.9
782,608 + lepA DVU0703 0.23 -0.1
782,768 + lepA DVU0703 0.32 +1.1
782,880 + lepA DVU0703 0.38 +1.3
783,058 + lepA DVU0703 0.48 +1.6
783,133 - lepA DVU0703 0.52 -1.1
783,616 - lepA DVU0703 0.79 +0.2
783,941 + -0.3
784,800 - -1.7
784,945 + +0.3
784,945 + +0.9
784,945 + -0.0
784,975 + -0.8
784,983 - -0.3
784,983 - +0.2

Or see this region's nucleotide sequence