Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1585 and SMa1586 are separated by 897 nucleotides SMa1586 and SMa1587 are separated by 305 nucleotides
SMa1585: SMa1585 - hypothetical protein, at 878,659 to 878,961
SMa1585
SMa1586: SMa1586 - SyrB2 regulator, at 879,859 to 880,314
SMa1586
SMa1587: SMa1587 - EglC endo-1,3-1,4-BETA-glycanase, at 880,620 to 882,017
SMa1587
Position (kb) 879
880
881 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 878.896 kb on + strand, within SMa1585 at 878.897 kb on - strand, within SMa1585 at 878.944 kb on + strand at 878.956 kb on - strand at 879.011 kb on - strand at 879.082 kb on - strand at 879.149 kb on - strand at 879.149 kb on - strand at 879.186 kb on + strand at 879.293 kb on - strand at 879.650 kb on + strand at 879.651 kb on - strand at 879.651 kb on - strand at 879.689 kb on + strand at 879.689 kb on + strand at 879.696 kb on + strand at 879.697 kb on - strand at 879.714 kb on + strand at 879.715 kb on - strand at 880.018 kb on + strand, within SMa1586 at 880.019 kb on - strand, within SMa1586 at 880.038 kb on - strand, within SMa1586 at 880.038 kb on - strand, within SMa1586 at 880.041 kb on - strand, within SMa1586 at 880.150 kb on - strand, within SMa1586 at 880.150 kb on - strand, within SMa1586 at 880.151 kb on + strand, within SMa1586 at 880.239 kb on + strand, within SMa1586 at 880.330 kb on + strand at 880.330 kb on + strand at 880.331 kb on - strand at 880.335 kb on - strand at 880.335 kb on - strand at 880.453 kb on + strand at 880.454 kb on - strand at 880.454 kb on - strand at 880.465 kb on - strand at 880.498 kb on + strand at 880.499 kb on - strand at 880.499 kb on - strand at 880.671 kb on - strand at 880.671 kb on - strand at 880.676 kb on + strand at 880.769 kb on + strand, within SMa1587 at 880.797 kb on + strand, within SMa1587 at 880.797 kb on + strand, within SMa1587 at 880.797 kb on + strand, within SMa1587 at 880.797 kb on + strand, within SMa1587 at 880.798 kb on - strand, within SMa1587 at 880.875 kb on + strand, within SMa1587 at 880.876 kb on - strand, within SMa1587 at 880.940 kb on + strand, within SMa1587 at 880.940 kb on + strand, within SMa1587 at 880.941 kb on - strand, within SMa1587 at 881.120 kb on + strand, within SMa1587 at 881.121 kb on - strand, within SMa1587 at 881.196 kb on + strand, within SMa1587 at 881.197 kb on - strand, within SMa1587 at 881.213 kb on + strand, within SMa1587 at 881.214 kb on - strand, within SMa1587
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 878,896 + SMa1585 0.78 +0.2 878,897 - SMa1585 0.79 +0.8 878,944 + -0.1 878,956 - -1.6 879,011 - +0.2 879,082 - +1.2 879,149 - +1.6 879,149 - +0.7 879,186 + -0.4 879,293 - +0.5 879,650 + -0.6 879,651 - +0.6 879,651 - -0.2 879,689 + -0.8 879,689 + -0.5 879,696 + -0.2 879,697 - +0.9 879,714 + -0.1 879,715 - -0.2 880,018 + SMa1586 0.35 -1.5 880,019 - SMa1586 0.35 -0.3 880,038 - SMa1586 0.39 -1.2 880,038 - SMa1586 0.39 -0.6 880,041 - SMa1586 0.40 -0.6 880,150 - SMa1586 0.64 -0.4 880,150 - SMa1586 0.64 +0.5 880,151 + SMa1586 0.64 +1.6 880,239 + SMa1586 0.83 -0.8 880,330 + +2.8 880,330 + +0.7 880,331 - +0.7 880,335 - -2.0 880,335 - +0.9 880,453 + -0.0 880,454 - +0.1 880,454 - -0.1 880,465 - +0.1 880,498 + +0.0 880,499 - -1.7 880,499 - -0.1 880,671 - -0.7 880,671 - -0.6 880,676 + -0.1 880,769 + SMa1587 0.11 +0.7 880,797 + SMa1587 0.13 +1.1 880,797 + SMa1587 0.13 +0.2 880,797 + SMa1587 0.13 -0.1 880,797 + SMa1587 0.13 -0.7 880,798 - SMa1587 0.13 +0.5 880,875 + SMa1587 0.18 +0.2 880,876 - SMa1587 0.18 -0.0 880,940 + SMa1587 0.23 +0.4 880,940 + SMa1587 0.23 +0.1 880,941 - SMa1587 0.23 -0.2 881,120 + SMa1587 0.36 +1.4 881,121 - SMa1587 0.36 -0.8 881,196 + SMa1587 0.41 -0.1 881,197 - SMa1587 0.41 +1.9 881,213 + SMa1587 0.42 +0.6 881,214 - SMa1587 0.42 -0.5
Or see this region's nucleotide sequence