Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0751 and SMa0752 are separated by 4 nucleotides SMa0752 and SMa0753 are separated by 295 nucleotides
SMa0751: SMa0751 - Ring-hydroxylating dioxygenase, at 404,204 to 405,442
SMa0751
SMa0752: SMa0752 - dioxygenase reductase subunit, at 405,447 to 406,508
SMa0752
SMa0753: SMa0753 - hypothetical protein, at 406,804 to 407,496
SMa0753
Position (kb) 405
406
407 Strain fitness (log2 ratio) -2
-1
0
1 at 404.540 kb on + strand, within SMa0751 at 404.540 kb on + strand, within SMa0751 at 404.540 kb on + strand, within SMa0751 at 404.648 kb on + strand, within SMa0751 at 404.648 kb on + strand, within SMa0751 at 404.649 kb on - strand, within SMa0751 at 404.649 kb on - strand, within SMa0751 at 404.650 kb on + strand, within SMa0751 at 404.651 kb on - strand, within SMa0751 at 404.708 kb on + strand, within SMa0751 at 404.755 kb on + strand, within SMa0751 at 404.810 kb on + strand, within SMa0751 at 404.899 kb on + strand, within SMa0751 at 404.899 kb on + strand, within SMa0751 at 404.900 kb on - strand, within SMa0751 at 404.900 kb on - strand, within SMa0751 at 404.992 kb on + strand, within SMa0751 at 405.021 kb on - strand, within SMa0751 at 405.023 kb on - strand, within SMa0751 at 405.023 kb on - strand, within SMa0751 at 405.023 kb on - strand, within SMa0751 at 405.105 kb on - strand, within SMa0751 at 405.158 kb on - strand, within SMa0751 at 405.205 kb on - strand, within SMa0751 at 405.234 kb on - strand, within SMa0751 at 405.389 kb on + strand at 405.390 kb on - strand at 405.636 kb on + strand, within SMa0752 at 405.636 kb on + strand, within SMa0752 at 405.636 kb on + strand, within SMa0752 at 405.637 kb on - strand, within SMa0752 at 405.637 kb on - strand, within SMa0752 at 405.637 kb on - strand, within SMa0752 at 405.638 kb on + strand, within SMa0752 at 405.733 kb on + strand, within SMa0752 at 405.733 kb on + strand, within SMa0752 at 405.734 kb on - strand, within SMa0752 at 405.734 kb on - strand, within SMa0752 at 405.737 kb on + strand, within SMa0752 at 405.737 kb on + strand, within SMa0752 at 405.737 kb on + strand, within SMa0752 at 405.738 kb on - strand, within SMa0752 at 406.077 kb on + strand, within SMa0752 at 406.118 kb on + strand, within SMa0752 at 406.118 kb on + strand, within SMa0752 at 406.119 kb on - strand, within SMa0752 at 406.309 kb on + strand, within SMa0752 at 406.379 kb on + strand, within SMa0752 at 406.379 kb on + strand, within SMa0752 at 406.380 kb on - strand, within SMa0752 at 406.380 kb on - strand, within SMa0752 at 406.380 kb on - strand, within SMa0752 at 406.409 kb on + strand at 406.410 kb on - strand at 406.410 kb on - strand at 406.456 kb on - strand at 406.456 kb on - strand at 406.456 kb on - strand at 406.457 kb on + strand at 406.457 kb on + strand at 406.457 kb on + strand at 406.458 kb on - strand at 406.458 kb on - strand at 406.492 kb on + strand at 406.493 kb on - strand at 406.506 kb on + strand at 406.507 kb on - strand at 406.745 kb on - strand at 406.930 kb on - strand, within SMa0753
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 404,540 + SMa0751 0.27 +0.2 404,540 + SMa0751 0.27 +0.3 404,540 + SMa0751 0.27 +0.1 404,648 + SMa0751 0.36 +0.3 404,648 + SMa0751 0.36 +0.7 404,649 - SMa0751 0.36 +0.7 404,649 - SMa0751 0.36 +0.7 404,650 + SMa0751 0.36 +0.6 404,651 - SMa0751 0.36 +0.1 404,708 + SMa0751 0.41 +0.2 404,755 + SMa0751 0.44 -0.0 404,810 + SMa0751 0.49 +0.3 404,899 + SMa0751 0.56 -0.4 404,899 + SMa0751 0.56 +1.2 404,900 - SMa0751 0.56 +0.2 404,900 - SMa0751 0.56 -1.9 404,992 + SMa0751 0.64 -1.0 405,021 - SMa0751 0.66 -0.2 405,023 - SMa0751 0.66 -0.3 405,023 - SMa0751 0.66 +0.2 405,023 - SMa0751 0.66 +0.0 405,105 - SMa0751 0.73 -0.4 405,158 - SMa0751 0.77 -0.1 405,205 - SMa0751 0.81 -0.4 405,234 - SMa0751 0.83 -1.5 405,389 + -0.0 405,390 - +0.6 405,636 + SMa0752 0.18 -0.0 405,636 + SMa0752 0.18 -1.1 405,636 + SMa0752 0.18 +0.3 405,637 - SMa0752 0.18 +0.2 405,637 - SMa0752 0.18 -0.0 405,637 - SMa0752 0.18 -0.4 405,638 + SMa0752 0.18 +0.2 405,733 + SMa0752 0.27 +0.3 405,733 + SMa0752 0.27 +0.4 405,734 - SMa0752 0.27 -0.1 405,734 - SMa0752 0.27 +0.1 405,737 + SMa0752 0.27 -0.0 405,737 + SMa0752 0.27 +0.3 405,737 + SMa0752 0.27 -1.8 405,738 - SMa0752 0.27 +0.6 406,077 + SMa0752 0.59 +0.1 406,118 + SMa0752 0.63 +0.1 406,118 + SMa0752 0.63 +1.7 406,119 - SMa0752 0.63 +0.2 406,309 + SMa0752 0.81 +0.2 406,379 + SMa0752 0.88 +0.2 406,379 + SMa0752 0.88 +0.7 406,380 - SMa0752 0.88 +0.1 406,380 - SMa0752 0.88 +1.4 406,380 - SMa0752 0.88 +0.6 406,409 + +0.9 406,410 - +0.1 406,410 - +0.8 406,456 - -0.0 406,456 - +0.6 406,456 - +1.0 406,457 + +0.4 406,457 + -0.7 406,457 + -0.1 406,458 - +0.4 406,458 - +0.2 406,492 + -0.1 406,493 - -0.4 406,506 + -0.2 406,507 - -0.1 406,745 - -0.0 406,930 - SMa0753 0.18 -0.8
Or see this region's nucleotide sequence