Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21573

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21572 and SM_b21573 are separated by 96 nucleotidesSM_b21573 and SM_b21574 are separated by 419 nucleotides SM_b21572: SM_b21572 - amino acid uptake ABC transporter substrate-binding protein precursor, at 1,110,929 to 1,111,930 _b21572 SM_b21573: SM_b21573 - hypothetical protein, at 1,112,027 to 1,113,010 _b21573 SM_b21574: SM_b21574 - sensor histidine kinase domain-containing protein, at 1,113,430 to 1,113,813 _b21574 Position (kb) 1112 1113 1114Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1111.231 kb on + strand, within SM_b21572at 1111.232 kb on - strand, within SM_b21572at 1111.232 kb on - strand, within SM_b21572at 1111.232 kb on - strand, within SM_b21572at 1111.232 kb on - strand, within SM_b21572at 1111.232 kb on - strand, within SM_b21572at 1111.441 kb on + strand, within SM_b21572at 1111.526 kb on + strand, within SM_b21572at 1111.526 kb on + strand, within SM_b21572at 1111.527 kb on - strand, within SM_b21572at 1111.527 kb on - strand, within SM_b21572at 1111.549 kb on + strand, within SM_b21572at 1111.549 kb on + strand, within SM_b21572at 1111.549 kb on + strand, within SM_b21572at 1111.549 kb on + strand, within SM_b21572at 1111.550 kb on - strand, within SM_b21572at 1111.550 kb on - strand, within SM_b21572at 1111.550 kb on - strand, within SM_b21572at 1111.553 kb on + strand, within SM_b21572at 1111.553 kb on + strand, within SM_b21572at 1111.554 kb on - strand, within SM_b21572at 1111.554 kb on - strand, within SM_b21572at 1111.556 kb on + strand, within SM_b21572at 1111.557 kb on - strand, within SM_b21572at 1111.567 kb on + strand, within SM_b21572at 1111.586 kb on + strand, within SM_b21572at 1111.587 kb on - strand, within SM_b21572at 1111.758 kb on - strand, within SM_b21572at 1111.758 kb on - strand, within SM_b21572at 1112.249 kb on + strand, within SM_b21573at 1112.250 kb on - strand, within SM_b21573at 1112.252 kb on + strand, within SM_b21573at 1112.253 kb on - strand, within SM_b21573at 1112.253 kb on - strand, within SM_b21573at 1112.375 kb on + strand, within SM_b21573at 1112.375 kb on + strand, within SM_b21573at 1112.375 kb on + strand, within SM_b21573at 1112.376 kb on - strand, within SM_b21573at 1112.376 kb on - strand, within SM_b21573at 1112.464 kb on + strand, within SM_b21573at 1112.464 kb on + strand, within SM_b21573at 1112.464 kb on + strand, within SM_b21573at 1112.465 kb on - strand, within SM_b21573at 1112.465 kb on - strand, within SM_b21573at 1112.465 kb on - strand, within SM_b21573at 1112.610 kb on + strand, within SM_b21573at 1112.610 kb on + strand, within SM_b21573at 1112.610 kb on + strand, within SM_b21573at 1112.611 kb on - strand, within SM_b21573at 1112.611 kb on - strandat 1112.675 kb on + strand, within SM_b21573at 1112.762 kb on + strand, within SM_b21573at 1112.763 kb on - strand, within SM_b21573at 1112.873 kb on + strand, within SM_b21573at 1112.873 kb on + strand, within SM_b21573at 1112.873 kb on + strand, within SM_b21573at 1112.873 kb on + strand, within SM_b21573at 1112.874 kb on - strand, within SM_b21573at 1112.874 kb on - strand, within SM_b21573at 1112.912 kb on - strandat 1113.106 kb on - strandat 1113.112 kb on + strandat 1113.152 kb on - strandat 1113.204 kb on - strandat 1113.206 kb on + strandat 1113.207 kb on - strandat 1113.215 kb on + strandat 1113.216 kb on - strandat 1113.268 kb on + strandat 1113.378 kb on - strandat 1113.476 kb on + strand, within SM_b21574at 1113.476 kb on + strand, within SM_b21574at 1113.644 kb on - strand, within SM_b21574at 1113.644 kb on - strand, within SM_b21574at 1113.751 kb on - strand, within SM_b21574at 1113.761 kb on + strand, within SM_b21574at 1113.761 kb on + strand, within SM_b21574at 1113.762 kb on - strand, within SM_b21574at 1113.762 kb on - strand, within SM_b21574at 1113.835 kb on - strandat 1113.857 kb on - strandat 1113.924 kb on - strandat 1113.924 kb on - strandat 1113.924 kb on - strandat 1113.959 kb on + strandat 1113.959 kb on + strandat 1113.960 kb on - strandat 1113.960 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,111,231 + SM_b21572 0.30 -0.3
1,111,232 - SM_b21572 0.30 -0.6
1,111,232 - SM_b21572 0.30 -0.2
1,111,232 - SM_b21572 0.30 -1.2
1,111,232 - SM_b21572 0.30 -0.3
1,111,232 - SM_b21572 0.30 +0.1
1,111,441 + SM_b21572 0.51 +0.0
1,111,526 + SM_b21572 0.60 +0.6
1,111,526 + SM_b21572 0.60 -0.1
1,111,527 - SM_b21572 0.60 -0.3
1,111,527 - SM_b21572 0.60 -0.5
1,111,549 + SM_b21572 0.62 +0.2
1,111,549 + SM_b21572 0.62 +0.8
1,111,549 + SM_b21572 0.62 -0.9
1,111,549 + SM_b21572 0.62 -0.6
1,111,550 - SM_b21572 0.62 -0.1
1,111,550 - SM_b21572 0.62 +1.0
1,111,550 - SM_b21572 0.62 -0.7
1,111,553 + SM_b21572 0.62 +1.8
1,111,553 + SM_b21572 0.62 -0.2
1,111,554 - SM_b21572 0.62 +0.8
1,111,554 - SM_b21572 0.62 -0.9
1,111,556 + SM_b21572 0.63 +0.3
1,111,557 - SM_b21572 0.63 -0.4
1,111,567 + SM_b21572 0.64 +1.2
1,111,586 + SM_b21572 0.66 +1.0
1,111,587 - SM_b21572 0.66 +0.2
1,111,758 - SM_b21572 0.83 -0.2
1,111,758 - SM_b21572 0.83 -0.1
1,112,249 + SM_b21573 0.23 +0.1
1,112,250 - SM_b21573 0.23 +0.1
1,112,252 + SM_b21573 0.23 -0.2
1,112,253 - SM_b21573 0.23 +0.9
1,112,253 - SM_b21573 0.23 -0.1
1,112,375 + SM_b21573 0.35 +1.1
1,112,375 + SM_b21573 0.35 -2.5
1,112,375 + SM_b21573 0.35 +0.6
1,112,376 - SM_b21573 0.35 +0.2
1,112,376 - SM_b21573 0.35 +1.3
1,112,464 + SM_b21573 0.44 -0.1
1,112,464 + SM_b21573 0.44 -0.3
1,112,464 + SM_b21573 0.44 +1.4
1,112,465 - SM_b21573 0.45 +0.3
1,112,465 - SM_b21573 0.45 -0.0
1,112,465 - SM_b21573 0.45 +0.0
1,112,610 + SM_b21573 0.59 -1.1
1,112,610 + SM_b21573 0.59 -0.1
1,112,610 + SM_b21573 0.59 +0.6
1,112,611 - SM_b21573 0.59 -0.1
1,112,611 - +0.1
1,112,675 + SM_b21573 0.66 +0.0
1,112,762 + SM_b21573 0.75 +0.2
1,112,763 - SM_b21573 0.75 +1.1
1,112,873 + SM_b21573 0.86 +0.6
1,112,873 + SM_b21573 0.86 +1.0
1,112,873 + SM_b21573 0.86 -0.7
1,112,873 + SM_b21573 0.86 +0.6
1,112,874 - SM_b21573 0.86 -0.2
1,112,874 - SM_b21573 0.86 -0.6
1,112,912 - +0.1
1,113,106 - +3.8
1,113,112 + -1.4
1,113,152 - +0.3
1,113,204 - +0.1
1,113,206 + -0.2
1,113,207 - -0.3
1,113,215 + -0.8
1,113,216 - +0.2
1,113,268 + -0.3
1,113,378 - -0.1
1,113,476 + SM_b21574 0.12 -0.4
1,113,476 + SM_b21574 0.12 +0.2
1,113,644 - SM_b21574 0.56 -0.2
1,113,644 - SM_b21574 0.56 -0.1
1,113,751 - SM_b21574 0.84 -1.1
1,113,761 + SM_b21574 0.86 -0.8
1,113,761 + SM_b21574 0.86 -0.2
1,113,762 - SM_b21574 0.86 +0.2
1,113,762 - SM_b21574 0.86 -2.4
1,113,835 - -0.3
1,113,857 - -0.1
1,113,924 - +0.1
1,113,924 - -0.6
1,113,924 - -1.8
1,113,959 + -0.7
1,113,959 + +0.4
1,113,960 - +0.0
1,113,960 - -0.2

Or see this region's nucleotide sequence