Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20467

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20466 and SM_b20467 are separated by 248 nucleotidesSM_b20467 and SM_b20468 overlap by 4 nucleotidesSM_b20468 and SM_b20469 are separated by 29 nucleotides SM_b20466: SM_b20466 - glucanase, at 478,310 to 479,467 _b20466 SM_b20467: SM_b20467 - sensor kinase, at 479,716 to 481,539 _b20467 SM_b20468: SM_b20468 - sensory transduction DNA-binding response regulator protein, at 481,536 to 482,180 _b20468 SM_b20469: SM_b20469 - hypothetical protein, at 482,210 to 483,286 _b20469 Position (kb) 479 480 481 482Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 478.742 kb on - strand, within SM_b20466at 478.788 kb on + strand, within SM_b20466at 478.788 kb on + strand, within SM_b20466at 478.789 kb on - strand, within SM_b20466at 478.789 kb on - strand, within SM_b20466at 478.789 kb on - strand, within SM_b20466at 478.842 kb on + strand, within SM_b20466at 478.986 kb on + strand, within SM_b20466at 478.986 kb on + strand, within SM_b20466at 478.987 kb on - strand, within SM_b20466at 478.987 kb on - strand, within SM_b20466at 478.987 kb on - strand, within SM_b20466at 478.987 kb on - strand, within SM_b20466at 479.041 kb on - strand, within SM_b20466at 479.126 kb on + strand, within SM_b20466at 479.127 kb on - strand, within SM_b20466at 479.127 kb on - strand, within SM_b20466at 479.201 kb on + strand, within SM_b20466at 479.202 kb on - strand, within SM_b20466at 479.289 kb on - strand, within SM_b20466at 479.297 kb on - strand, within SM_b20466at 479.339 kb on + strand, within SM_b20466at 479.339 kb on + strand, within SM_b20466at 479.339 kb on + strand, within SM_b20466at 479.340 kb on - strand, within SM_b20466at 479.578 kb on + strandat 479.596 kb on - strandat 479.605 kb on + strandat 479.768 kb on - strandat 479.768 kb on - strandat 479.868 kb on + strandat 479.869 kb on - strandat 479.895 kb on + strandat 479.956 kb on - strand, within SM_b20467at 479.956 kb on - strand, within SM_b20467at 480.005 kb on - strand, within SM_b20467at 480.005 kb on - strand, within SM_b20467at 480.005 kb on - strand, within SM_b20467at 480.005 kb on - strand, within SM_b20467at 480.014 kb on - strand, within SM_b20467at 480.014 kb on - strand, within SM_b20467at 480.014 kb on - strand, within SM_b20467at 480.242 kb on + strand, within SM_b20467at 480.243 kb on - strand, within SM_b20467at 480.243 kb on - strand, within SM_b20467at 480.244 kb on + strand, within SM_b20467at 480.245 kb on - strand, within SM_b20467at 480.245 kb on - strand, within SM_b20467at 480.245 kb on - strand, within SM_b20467at 480.258 kb on + strand, within SM_b20467at 480.259 kb on - strand, within SM_b20467at 480.261 kb on + strand, within SM_b20467at 480.261 kb on + strand, within SM_b20467at 480.262 kb on - strand, within SM_b20467at 480.262 kb on - strand, within SM_b20467at 480.389 kb on + strand, within SM_b20467at 480.389 kb on + strand, within SM_b20467at 480.390 kb on - strand, within SM_b20467at 480.390 kb on - strand, within SM_b20467at 480.390 kb on - strand, within SM_b20467at 480.457 kb on + strand, within SM_b20467at 480.569 kb on + strand, within SM_b20467at 480.570 kb on - strand, within SM_b20467at 480.570 kb on - strand, within SM_b20467at 480.583 kb on + strand, within SM_b20467at 480.583 kb on + strand, within SM_b20467at 480.584 kb on - strand, within SM_b20467at 480.884 kb on + strand, within SM_b20467at 481.018 kb on + strand, within SM_b20467at 481.018 kb on + strand, within SM_b20467at 481.018 kb on + strand, within SM_b20467at 481.019 kb on - strand, within SM_b20467at 481.041 kb on - strand, within SM_b20467at 481.082 kb on + strand, within SM_b20467at 481.083 kb on - strand, within SM_b20467at 481.083 kb on - strand, within SM_b20467at 481.083 kb on - strand, within SM_b20467at 481.194 kb on - strand, within SM_b20467at 481.211 kb on + strand, within SM_b20467at 481.211 kb on + strand, within SM_b20467at 481.212 kb on - strand, within SM_b20467at 481.212 kb on - strand, within SM_b20467at 481.212 kb on - strand, within SM_b20467at 481.214 kb on - strand, within SM_b20467at 481.214 kb on - strand, within SM_b20467at 481.263 kb on + strand, within SM_b20467at 481.263 kb on + strand, within SM_b20467at 481.263 kb on + strand, within SM_b20467at 481.263 kb on + strand, within SM_b20467at 481.263 kb on + strand, within SM_b20467at 481.264 kb on - strand, within SM_b20467at 481.264 kb on - strand, within SM_b20467at 481.269 kb on - strand, within SM_b20467at 481.346 kb on + strand, within SM_b20467at 481.346 kb on + strand, within SM_b20467at 481.346 kb on + strand, within SM_b20467at 481.484 kb on + strandat 481.573 kb on + strandat 481.702 kb on + strand, within SM_b20468at 481.702 kb on + strand, within SM_b20468at 481.703 kb on - strand, within SM_b20468at 481.703 kb on - strand, within SM_b20468at 481.703 kb on - strand, within SM_b20468at 481.703 kb on - strand, within SM_b20468at 481.733 kb on + strand, within SM_b20468at 481.819 kb on + strand, within SM_b20468at 481.908 kb on + strand, within SM_b20468at 481.909 kb on - strand, within SM_b20468at 481.928 kb on - strand, within SM_b20468at 482.107 kb on - strand, within SM_b20468at 482.107 kb on - strand, within SM_b20468at 482.148 kb on - strandat 482.319 kb on + strand, within SM_b20469at 482.319 kb on + strand, within SM_b20469at 482.319 kb on + strand, within SM_b20469at 482.320 kb on - strand, within SM_b20469at 482.320 kb on - strand, within SM_b20469at 482.320 kb on - strand, within SM_b20469at 482.329 kb on + strand, within SM_b20469at 482.330 kb on - strand, within SM_b20469at 482.330 kb on - strand, within SM_b20469at 482.330 kb on - strand, within SM_b20469at 482.475 kb on + strand, within SM_b20469at 482.475 kb on + strand, within SM_b20469at 482.475 kb on + strand, within SM_b20469at 482.476 kb on - strand, within SM_b20469at 482.476 kb on - strand, within SM_b20469at 482.485 kb on + strand, within SM_b20469at 482.485 kb on + strand, within SM_b20469at 482.485 kb on + strand, within SM_b20469

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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478,742 - SM_b20466 0.37 +0.4
478,788 + SM_b20466 0.41 +0.3
478,788 + SM_b20466 0.41 -0.6
478,789 - SM_b20466 0.41 +0.1
478,789 - SM_b20466 0.41 +0.2
478,789 - SM_b20466 0.41 +0.0
478,842 + SM_b20466 0.46 +0.4
478,986 + SM_b20466 0.58 +0.7
478,986 + SM_b20466 0.58 -0.1
478,987 - SM_b20466 0.58 -0.3
478,987 - SM_b20466 0.58 -0.4
478,987 - SM_b20466 0.58 -0.2
478,987 - SM_b20466 0.58 -0.5
479,041 - SM_b20466 0.63 -0.4
479,126 + SM_b20466 0.70 -0.5
479,127 - SM_b20466 0.71 -0.0
479,127 - SM_b20466 0.71 -0.0
479,201 + SM_b20466 0.77 +0.0
479,202 - SM_b20466 0.77 +0.2
479,289 - SM_b20466 0.85 -1.8
479,297 - SM_b20466 0.85 +0.2
479,339 + SM_b20466 0.89 -0.2
479,339 + SM_b20466 0.89 +0.2
479,339 + SM_b20466 0.89 -1.1
479,340 - SM_b20466 0.89 -0.3
479,578 + -0.7
479,596 - +1.5
479,605 + +0.1
479,768 - -0.7
479,768 - -0.0
479,868 + -0.4
479,869 - +0.2
479,895 + +1.0
479,956 - SM_b20467 0.13 -1.4
479,956 - SM_b20467 0.13 +0.2
480,005 - SM_b20467 0.16 -0.1
480,005 - SM_b20467 0.16 -0.4
480,005 - SM_b20467 0.16 -0.5
480,005 - SM_b20467 0.16 +0.7
480,014 - SM_b20467 0.16 -0.1
480,014 - SM_b20467 0.16 +1.8
480,014 - SM_b20467 0.16 -0.5
480,242 + SM_b20467 0.29 -0.6
480,243 - SM_b20467 0.29 -1.0
480,243 - SM_b20467 0.29 -0.7
480,244 + SM_b20467 0.29 +0.8
480,245 - SM_b20467 0.29 +0.6
480,245 - SM_b20467 0.29 -0.4
480,245 - SM_b20467 0.29 -1.9
480,258 + SM_b20467 0.30 -0.0
480,259 - SM_b20467 0.30 +0.2
480,261 + SM_b20467 0.30 -0.7
480,261 + SM_b20467 0.30 -0.3
480,262 - SM_b20467 0.30 +0.2
480,262 - SM_b20467 0.30 +0.0
480,389 + SM_b20467 0.37 +0.3
480,389 + SM_b20467 0.37 -0.1
480,390 - SM_b20467 0.37 -1.8
480,390 - SM_b20467 0.37 -0.5
480,390 - SM_b20467 0.37 -0.2
480,457 + SM_b20467 0.41 -0.4
480,569 + SM_b20467 0.47 -0.0
480,570 - SM_b20467 0.47 -0.0
480,570 - SM_b20467 0.47 +0.7
480,583 + SM_b20467 0.48 -0.4
480,583 + SM_b20467 0.48 -0.2
480,584 - SM_b20467 0.48 -0.1
480,884 + SM_b20467 0.64 +1.2
481,018 + SM_b20467 0.71 +0.4
481,018 + SM_b20467 0.71 -0.2
481,018 + SM_b20467 0.71 -0.0
481,019 - SM_b20467 0.71 -0.6
481,041 - SM_b20467 0.73 -0.8
481,082 + SM_b20467 0.75 -1.1
481,083 - SM_b20467 0.75 -0.7
481,083 - SM_b20467 0.75 -0.1
481,083 - SM_b20467 0.75 +0.3
481,194 - SM_b20467 0.81 -1.0
481,211 + SM_b20467 0.82 -0.7
481,211 + SM_b20467 0.82 -0.6
481,212 - SM_b20467 0.82 +0.8
481,212 - SM_b20467 0.82 -0.2
481,212 - SM_b20467 0.82 +1.0
481,214 - SM_b20467 0.82 -0.4
481,214 - SM_b20467 0.82 -1.8
481,263 + SM_b20467 0.85 -0.4
481,263 + SM_b20467 0.85 -0.9
481,263 + SM_b20467 0.85 +0.1
481,263 + SM_b20467 0.85 +0.5
481,263 + SM_b20467 0.85 +0.5
481,264 - SM_b20467 0.85 -0.5
481,264 - SM_b20467 0.85 +0.3
481,269 - SM_b20467 0.85 +0.5
481,346 + SM_b20467 0.89 -0.5
481,346 + SM_b20467 0.89 +0.2
481,346 + SM_b20467 0.89 -0.3
481,484 + +0.8
481,573 + +0.8
481,702 + SM_b20468 0.26 +0.2
481,702 + SM_b20468 0.26 -0.1
481,703 - SM_b20468 0.26 +0.6
481,703 - SM_b20468 0.26 -1.5
481,703 - SM_b20468 0.26 -0.5
481,703 - SM_b20468 0.26 -0.1
481,733 + SM_b20468 0.31 +0.3
481,819 + SM_b20468 0.44 +0.4
481,908 + SM_b20468 0.58 -0.0
481,909 - SM_b20468 0.58 -0.4
481,928 - SM_b20468 0.61 -0.1
482,107 - SM_b20468 0.89 -0.5
482,107 - SM_b20468 0.89 -0.5
482,148 - +0.6
482,319 + SM_b20469 0.10 -0.5
482,319 + SM_b20469 0.10 -0.7
482,319 + SM_b20469 0.10 +0.0
482,320 - SM_b20469 0.10 -0.0
482,320 - SM_b20469 0.10 +0.8
482,320 - SM_b20469 0.10 +0.3
482,329 + SM_b20469 0.11 +0.7
482,330 - SM_b20469 0.11 +0.1
482,330 - SM_b20469 0.11 +0.8
482,330 - SM_b20469 0.11 +0.1
482,475 + SM_b20469 0.25 +0.3
482,475 + SM_b20469 0.25 -0.2
482,475 + SM_b20469 0.25 -2.0
482,476 - SM_b20469 0.25 +0.9
482,476 - SM_b20469 0.25 +0.0
482,485 + SM_b20469 0.26 -5.4
482,485 + SM_b20469 0.26 +0.6
482,485 + SM_b20469 0.26 -0.1

Or see this region's nucleotide sequence