Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20130 and SM_b20131 overlap by 4 nucleotides SM_b20131 and SM_b20132 overlap by 4 nucleotides SM_b20132 and SM_b20133 overlap by 1 nucleotides
SM_b20130: SM_b20130 - dehydrogenase, at 142,635 to 143,498
_b20130
SM_b20131: SM_b20131 - oxidoreductase, at 143,495 to 143,980
_b20131
SM_b20132: SM_b20132 - dehydrogenase, at 143,977 to 146,295
_b20132
SM_b20133: SM_b20133 - hypothetical protein, at 146,295 to 147,344
_b20133
Position (kb) 143
144
145
146
147 Strain fitness (log2 ratio) -2
-1
0
1 at 143.046 kb on + strand, within SM_b20130 at 143.140 kb on + strand, within SM_b20130 at 143.578 kb on - strand, within SM_b20131 at 143.897 kb on - strand, within SM_b20131 at 143.916 kb on - strand, within SM_b20131 at 143.916 kb on - strand, within SM_b20131 at 143.916 kb on - strand, within SM_b20131 at 143.916 kb on - strand, within SM_b20131 at 143.977 kb on - strand at 143.986 kb on + strand at 143.986 kb on + strand at 143.986 kb on + strand at 143.986 kb on + strand at 143.987 kb on - strand at 143.987 kb on - strand at 144.088 kb on + strand at 144.088 kb on + strand at 144.088 kb on + strand at 144.292 kb on + strand, within SM_b20132 at 144.292 kb on + strand, within SM_b20132 at 144.293 kb on - strand, within SM_b20132 at 144.293 kb on - strand, within SM_b20132 at 144.317 kb on - strand, within SM_b20132 at 144.398 kb on - strand, within SM_b20132 at 144.566 kb on - strand, within SM_b20132 at 144.592 kb on + strand, within SM_b20132 at 144.592 kb on + strand, within SM_b20132 at 144.593 kb on - strand, within SM_b20132 at 144.595 kb on - strand, within SM_b20132 at 144.595 kb on - strand, within SM_b20132 at 144.890 kb on + strand, within SM_b20132 at 144.890 kb on + strand, within SM_b20132 at 144.891 kb on - strand, within SM_b20132 at 144.891 kb on - strand, within SM_b20132 at 145.063 kb on + strand, within SM_b20132 at 145.063 kb on + strand, within SM_b20132 at 145.063 kb on + strand, within SM_b20132 at 145.065 kb on + strand, within SM_b20132 at 145.117 kb on + strand at 145.120 kb on + strand, within SM_b20132 at 145.476 kb on + strand, within SM_b20132 at 145.571 kb on + strand, within SM_b20132 at 145.813 kb on + strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.814 kb on - strand, within SM_b20132 at 145.832 kb on - strand, within SM_b20132 at 146.005 kb on + strand, within SM_b20132 at 146.019 kb on + strand, within SM_b20132 at 146.056 kb on + strand, within SM_b20132 at 146.056 kb on + strand, within SM_b20132 at 146.056 kb on + strand, within SM_b20132 at 146.057 kb on - strand, within SM_b20132 at 146.200 kb on + strand at 146.201 kb on - strand at 146.386 kb on + strand at 146.386 kb on + strand at 146.387 kb on - strand at 146.387 kb on - strand at 146.487 kb on + strand, within SM_b20133 at 146.488 kb on - strand, within SM_b20133 at 146.947 kb on - strand, within SM_b20133 at 147.148 kb on + strand, within SM_b20133 at 147.149 kb on - strand, within SM_b20133 at 147.149 kb on - strand, within SM_b20133 at 147.151 kb on + strand, within SM_b20133 at 147.152 kb on - strand, within SM_b20133 at 147.152 kb on - strand, within SM_b20133 at 147.248 kb on + strand at 147.248 kb on + strand at 147.248 kb on + strand at 147.248 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 143,046 + SM_b20130 0.48 -0.3 143,140 + SM_b20130 0.58 -1.4 143,578 - SM_b20131 0.17 -1.3 143,897 - SM_b20131 0.83 -0.3 143,916 - SM_b20131 0.87 -1.2 143,916 - SM_b20131 0.87 -0.4 143,916 - SM_b20131 0.87 -2.3 143,916 - SM_b20131 0.87 -0.5 143,977 - +0.3 143,986 + +0.1 143,986 + -0.5 143,986 + +0.1 143,986 + +0.4 143,987 - -1.7 143,987 - +0.2 144,088 + +0.4 144,088 + -0.3 144,088 + +1.0 144,292 + SM_b20132 0.14 +0.1 144,292 + SM_b20132 0.14 +1.0 144,293 - SM_b20132 0.14 +0.2 144,293 - SM_b20132 0.14 +0.0 144,317 - SM_b20132 0.15 -0.3 144,398 - SM_b20132 0.18 +0.1 144,566 - SM_b20132 0.25 +1.2 144,592 + SM_b20132 0.27 +0.2 144,592 + SM_b20132 0.27 +0.1 144,593 - SM_b20132 0.27 +0.4 144,595 - SM_b20132 0.27 +0.1 144,595 - SM_b20132 0.27 +0.8 144,890 + SM_b20132 0.39 +0.1 144,890 + SM_b20132 0.39 +1.1 144,891 - SM_b20132 0.39 -0.0 144,891 - SM_b20132 0.39 -0.0 145,063 + SM_b20132 0.47 -0.1 145,063 + SM_b20132 0.47 +0.1 145,063 + SM_b20132 0.47 -1.1 145,065 + SM_b20132 0.47 -0.2 145,117 + -0.9 145,120 + SM_b20132 0.49 +0.1 145,476 + SM_b20132 0.65 +1.2 145,571 + SM_b20132 0.69 -0.4 145,813 + SM_b20132 0.79 +0.3 145,814 - SM_b20132 0.79 +0.1 145,814 - SM_b20132 0.79 -0.5 145,814 - SM_b20132 0.79 -0.3 145,814 - SM_b20132 0.79 +0.6 145,814 - SM_b20132 0.79 +0.2 145,814 - SM_b20132 0.79 -0.3 145,814 - SM_b20132 0.79 +0.7 145,814 - SM_b20132 0.79 +0.4 145,832 - SM_b20132 0.80 +0.2 146,005 + SM_b20132 0.87 -0.1 146,019 + SM_b20132 0.88 +0.1 146,056 + SM_b20132 0.90 +1.0 146,056 + SM_b20132 0.90 -0.4 146,056 + SM_b20132 0.90 -0.4 146,057 - SM_b20132 0.90 +0.1 146,200 + -0.0 146,201 - -0.5 146,386 + -0.2 146,386 + -0.4 146,387 - -0.9 146,387 - -0.1 146,487 + SM_b20133 0.18 -0.5 146,488 - SM_b20133 0.18 +0.7 146,947 - SM_b20133 0.62 -0.3 147,148 + SM_b20133 0.81 -0.2 147,149 - SM_b20133 0.81 -0.6 147,149 - SM_b20133 0.81 -0.1 147,151 + SM_b20133 0.82 +0.3 147,152 - SM_b20133 0.82 -0.2 147,152 - SM_b20133 0.82 -0.3 147,248 + +1.4 147,248 + -1.6 147,248 + +0.6 147,248 + -0.5
Or see this region's nucleotide sequence