Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18575

Experiment: diet=StandardDiet; sample=FecalPellet; mouse2; day4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; mouse2; day4
1,952,027	-		BBR_RS18570	0.24	+1.1
1,952,054	+		BBR_RS18570	0.26	+1.8
1,952,073	-		BBR_RS18570	0.28	-0.9
1,952,090	-		BBR_RS18570	0.29	+0.6
1,952,094	+		BBR_RS18570	0.30	-1.2
1,952,101	+		BBR_RS18570	0.30	+0.2
1,952,101	+		BBR_RS18570	0.30	-0.2
1,952,123	-		BBR_RS18570	0.32	+2.0
1,952,132	+		BBR_RS18570	0.33	-1.7
1,952,132	+		BBR_RS18570	0.33	+0.7
1,952,159	+		BBR_RS18570	0.35	+1.1
1,952,159	+		BBR_RS18570	0.35	-0.0
1,952,159	+		BBR_RS18570	0.35	+1.9
1,952,159	+		BBR_RS18570	0.35	-0.8
1,952,167	+		BBR_RS18570	0.36	-2.4
1,952,174	+		BBR_RS18570	0.37	+0.3
1,952,177	-		BBR_RS18570	0.37	-1.1
1,952,198	+		BBR_RS18570	0.39	+1.2
1,952,198	+		BBR_RS18570	0.39	+0.7
1,952,200	-		BBR_RS18570	0.39	-1.5
1,952,203	+		BBR_RS18570	0.39	+3.8
1,952,242	+		BBR_RS18570	0.43	-1.3
1,952,242	+		BBR_RS18570	0.43	-0.5
1,952,273	-		BBR_RS18570	0.45	+4.8
1,952,301	+		BBR_RS18570	0.48	+2.2
1,952,305	+		BBR_RS18570	0.48	+1.9
1,952,305	+		BBR_RS18570	0.48	+0.1
1,952,322	+		BBR_RS18570	0.50	-1.8
1,952,330	-		BBR_RS18570	0.50	-0.5
1,952,339	+		BBR_RS18570	0.51	+0.5
1,952,339	+		BBR_RS18570	0.51	+1.3
1,952,367	+		BBR_RS18570	0.54	+0.6
1,952,369	+		BBR_RS18570	0.54	-1.1
1,952,371	+		BBR_RS18570	0.54	-0.3
1,952,377	-		BBR_RS18570	0.54	+0.5
1,952,377	-		BBR_RS18570	0.54	-1.2
1,952,377	-		BBR_RS18570	0.54	+1.2
1,952,379	-		BBR_RS18570	0.55	+0.9
1,952,394	+		BBR_RS18570	0.56	-0.9
1,952,394	+		BBR_RS18570	0.56	+0.8
1,952,394	+		BBR_RS18570	0.56	-1.4
1,952,394	-		BBR_RS18570	0.56	+3.9
1,952,402	-		BBR_RS18570	0.57	+0.3
1,952,412	+		BBR_RS18570	0.58	+2.9
1,952,412	+		BBR_RS18570	0.58	+2.8
1,952,413	+		BBR_RS18570	0.58	-1.6
1,952,413	+		BBR_RS18570	0.58	+0.0
1,952,415	+		BBR_RS18570	0.58	-0.6
1,952,420	+		BBR_RS18570	0.58	+1.1
1,952,420	+		BBR_RS18570	0.58	-1.3
1,952,432	+		BBR_RS18570	0.59	-1.3
1,952,432	+		BBR_RS18570	0.59	-1.7
1,952,432	+		BBR_RS18570	0.59	-0.2
1,952,432	+		BBR_RS18570	0.59	+0.9
1,952,432	+		BBR_RS18570	0.59	+1.9
1,952,432	+		BBR_RS18570	0.59	+1.4
1,952,440	-		BBR_RS18570	0.60	-0.1
1,952,440	-		BBR_RS18570	0.60	+1.0
1,952,462	+		BBR_RS18570	0.62	+0.9
1,952,468	+		BBR_RS18570	0.62	-2.0
1,952,469	+		BBR_RS18570	0.63	+2.1
1,952,477	-		BBR_RS18570	0.63	+0.3
1,952,492	-		BBR_RS18570	0.65	+1.3
1,952,501	+		BBR_RS18570	0.65	-0.9
1,952,511	-		BBR_RS18570	0.66	-0.3
1,952,526	-		BBR_RS18570	0.68	+3.1
1,952,527	+		BBR_RS18570	0.68	+3.0
1,952,545	-		BBR_RS18570	0.69	+0.1
1,952,545	-		BBR_RS18570	0.69	-1.4
1,952,545	-		BBR_RS18570	0.69	-0.6
1,952,557	-		BBR_RS18570	0.70	+0.5
1,952,571	-		BBR_RS18570	0.72	+0.0
1,952,571	-		BBR_RS18570	0.72	+0.5
1,952,576	-		BBR_RS18570	0.72	-1.3
1,952,576	-		BBR_RS18570	0.72	-1.4
1,952,580	-		BBR_RS18570	0.72	+0.0
1,952,585	+		BBR_RS18570	0.73	-0.1
1,952,585	+		BBR_RS18570	0.73	-0.1
1,952,593	-		BBR_RS18570	0.73	-1.4
1,952,608	-		BBR_RS18570	0.75	+0.3
1,952,630	+		BBR_RS18570	0.77	+0.3
1,952,630	+		BBR_RS18570	0.77	+3.2
1,952,630	+		BBR_RS18570	0.77	-3.4
1,952,635	-		BBR_RS18570	0.77	+0.6
1,952,638	-		BBR_RS18570	0.77	+0.9
1,952,638	-		BBR_RS18570	0.77	-1.7
1,952,650	+		BBR_RS18570	0.78	+1.5
1,952,653	+		BBR_RS18570	0.79	+0.6
1,952,653	+		BBR_RS18570	0.79	-1.5
1,952,653	+		BBR_RS18570	0.79	-1.8
1,952,653	+		BBR_RS18570	0.79	-0.8
1,952,653	+		BBR_RS18570	0.79	+2.4
1,952,661	-		BBR_RS18570	0.79	+3.0
1,952,661	-		BBR_RS18570	0.79	+0.5
1,952,661	-		BBR_RS18570	0.79	+1.9
1,952,661	-		BBR_RS18570	0.79	-1.0
1,952,682	-		BBR_RS18570	0.81	+0.6
1,952,707	-		BBR_RS18570	0.83	-2.2
1,952,712	-		BBR_RS18570	0.84	-0.3
1,952,733	+		BBR_RS18570	0.86	+0.1
1,952,734	+		BBR_RS18570	0.86	+2.7
1,952,742	-		BBR_RS18570	0.87	+2.2
1,952,778	+		BBR_RS18570	0.90	-1.3
1,952,784	-				+2.6
1,952,830	+				+0.7
1,952,830	+				+0.8
1,952,838	-				-0.3
1,952,839	+				+3.2
1,952,840	-				+2.1
1,952,848	+				+1.2
1,952,853	+				-1.5
1,952,853	+				+2.4
1,952,861	-				+0.5
1,952,863	+				+1.6
1,952,884	+				+0.6
1,952,884	+				+1.4
1,952,884	+				-0.4
1,952,884	+				+0.7
1,952,884	+				-2.0
1,952,892	-				+0.8
1,952,892	-				-0.9
1,952,892	-				-0.1
1,952,892	-				-1.5
1,952,892	-				-0.6
1,952,892	-				-2.6
1,952,907	-				+1.5
1,952,907	-				-2.2
1,952,909	-				-0.6
1,952,920	+				-2.1
1,952,922	+				+0.2
1,952,928	-				+0.7
1,952,928	-				-1.3
1,952,929	+				+0.6
1,952,934	+				+0.6
1,952,934	+				-1.6
1,952,939	+				-1.8
1,952,939	+				-0.4
1,952,939	+				+0.4
1,952,975	-				-0.4
1,953,012	+				-2.1
1,953,022	+		BBR_RS18575	0.13	-1.5
1,953,042	-		BBR_RS18575	0.20	-0.1
1,953,076	+		BBR_RS18575	0.34	+0.9
1,953,083	+		BBR_RS18575	0.36	-0.2
1,953,083	+		BBR_RS18575	0.36	-1.1
1,953,083	+		BBR_RS18575	0.36	-3.1
1,953,091	-		BBR_RS18575	0.40	+2.9
1,953,091	-		BBR_RS18575	0.40	-0.8
1,953,091	-		BBR_RS18575	0.40	-0.0
1,953,098	+		BBR_RS18575	0.42	-1.8
1,953,103	+		BBR_RS18575	0.44	-1.2
1,953,141	+		BBR_RS18575	0.59	-0.1
1,953,178	-		BBR_RS18575	0.74	-1.1
1,953,224	-				-2.1
1,953,260	-				-1.9
1,953,262	+				+2.8
1,953,262	+				+0.3
1,953,262	+				-1.3
1,953,270	-				+0.4
1,953,276	+				+3.0
1,953,276	-				-1.1
1,953,276	-				+0.9
1,953,281	+				+1.4
1,953,284	-				-2.0
1,953,284	-				-1.9
1,953,284	-				+1.0
1,953,286	+				-1.0
1,953,289	-				+1.3
1,953,289	-				-0.9
1,953,294	-				-0.6
1,953,307	-				+2.5
1,953,307	-				-2.6
1,953,310	+				+1.6
1,953,347	+				-0.0
1,953,347	+				-1.0
1,953,347	+				+2.5
1,953,347	+				+3.3
1,953,355	-				+2.5
1,953,361	-				-1.5
1,953,366	-		BBR_RS18580	0.10	-1.0
1,953,366	-		BBR_RS18580	0.10	-0.1
1,953,399	+		BBR_RS18580	0.13	-1.5
1,953,399	+		BBR_RS18580	0.13	-1.1
1,953,407	-		BBR_RS18580	0.14	-0.0
1,953,407	-		BBR_RS18580	0.14	+1.0
1,953,443	+		BBR_RS18580	0.17	-0.1
1,953,450	-		BBR_RS18580	0.17	-0.8
1,953,451	-		BBR_RS18580	0.17	+1.3
1,953,456	-		BBR_RS18580	0.18	+0.6
1,953,456	-		BBR_RS18580	0.18	+0.4
1,953,479	+		BBR_RS18580	0.20	+2.1
1,953,512	-		BBR_RS18580	0.22	-2.2
1,953,512	-		BBR_RS18580	0.22	+0.4
1,953,516	-		BBR_RS18580	0.23	+1.4
1,953,533	+		BBR_RS18580	0.24	+0.9
1,953,533	+		BBR_RS18580	0.24	+1.1
1,953,541	-		BBR_RS18580	0.25	+0.9
1,953,570	+		BBR_RS18580	0.27	+1.0
1,953,570	+		BBR_RS18580	0.27	+0.7
1,953,570	+		BBR_RS18580	0.27	-0.6
1,953,598	+		BBR_RS18580	0.30	+0.5
1,953,613	-		BBR_RS18580	0.31	+2.8
1,953,626	+		BBR_RS18580	0.32	+1.4
1,953,656	-		BBR_RS18580	0.34	+0.9
1,953,664	-		BBR_RS18580	0.35	+3.3
1,953,716	-		BBR_RS18580	0.39	+0.9
1,953,718	+		BBR_RS18580	0.40	+0.2
1,953,718	+		BBR_RS18580	0.40	-0.2
1,953,727	-		BBR_RS18580	0.40	-0.7
1,953,727	-		BBR_RS18580	0.40	+1.9
1,953,729	-		BBR_RS18580	0.41	+0.5
1,953,729	-		BBR_RS18580	0.41	+1.0
1,953,740	+		BBR_RS18580	0.41	-2.2
1,953,748	-		BBR_RS18580	0.42	+0.6
1,953,763	-		BBR_RS18580	0.43	-1.0
1,953,765	+		BBR_RS18580	0.44	+1.4
1,953,799	+		BBR_RS18580	0.46	+0.7
1,953,799	+		BBR_RS18580	0.46	+0.6
1,953,809	+		BBR_RS18580	0.47	-2.1
1,953,809	+		BBR_RS18580	0.47	+0.5
1,953,823	-		BBR_RS18580	0.48	+3.4
1,953,834	-		BBR_RS18580	0.49	-0.2
1,953,858	+		BBR_RS18580	0.51	+0.5
1,953,858	+		BBR_RS18580	0.51	+1.4
1,953,858	+		BBR_RS18580	0.51	+1.5
1,953,866	-		BBR_RS18580	0.52	+0.9
1,953,877	-		BBR_RS18580	0.53	+2.1
1,953,887	+		BBR_RS18580	0.54	-2.8
1,953,900	-		BBR_RS18580	0.55	-0.3
1,953,900	-		BBR_RS18580	0.55	+0.9
1,953,900	-		BBR_RS18580	0.55	+0.1
1,953,900	-		BBR_RS18580	0.55	+0.3
1,953,900	-		BBR_RS18580	0.55	-0.1
1,953,923	-		BBR_RS18580	0.57	+1.0
1,953,957	+		BBR_RS18580	0.60	-2.1
1,953,967	+		BBR_RS18580	0.60	-2.7
1,954,003	+		BBR_RS18580	0.63	+2.4
1,954,011	-		BBR_RS18580	0.64	+1.0
1,954,045	+		BBR_RS18580	0.67	+0.8
1,954,045	-		BBR_RS18580	0.67	-0.1
1,954,073	-		BBR_RS18580	0.69	+3.2
1,954,081	-		BBR_RS18580	0.70	-0.1
1,954,083	-		BBR_RS18580	0.70	-0.6
1,954,099	-		BBR_RS18580	0.72	+1.2
1,954,099	-		BBR_RS18580	0.72	-0.5
1,954,135	-		BBR_RS18580	0.75	+0.9
1,954,138	-		BBR_RS18580	0.75	+0.2
1,954,150	-		BBR_RS18580	0.76	-2.2
1,954,150	-		BBR_RS18580	0.76	+0.5
1,954,150	-		BBR_RS18580	0.76	-0.2
1,954,151	+		BBR_RS18580	0.76	+0.1
1,954,206	+		BBR_RS18580	0.80	+1.0
1,954,206	+		BBR_RS18580	0.80	-0.2
1,954,224	-		BBR_RS18580	0.82	+0.7
1,954,224	-		BBR_RS18580	0.82	-1.5