Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17220

Experiment: diet=StandardDiet; sample=FecalPellet; mouse2; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS17210 and BBR_RS17215 are separated by 126 nucleotidesBBR_RS17215 and BBR_RS17220 are separated by 63 nucleotidesBBR_RS17220 and BBR_RS21000 are separated by 358 nucleotidesBBR_RS21000 and BBR_RS17225 overlap by 68 nucleotides BBR_RS17210: BBR_RS17210 - 26S protease regulatory subunit, at 1,639,480 to 1,640,685 _RS17210 BBR_RS17215: BBR_RS17215 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 1,640,812 to 1,641,621 _RS17215 BBR_RS17220: BBR_RS17220 - thiamine-binding protein, at 1,641,685 to 1,642,062 _RS17220 BBR_RS21000: BBR_RS21000 - hypothetical protein, at 1,642,421 to 1,642,654 _RS21000 BBR_RS17225: BBR_RS17225 - MFS transporter, at 1,642,587 to 1,643,966 _RS17225 Position (kb) 1641 1642 1643Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1640.689 kb on - strandat 1640.689 kb on - strandat 1640.694 kb on - strandat 1640.694 kb on - strandat 1640.737 kb on - strandat 1640.737 kb on - strandat 1640.739 kb on + strandat 1640.803 kb on - strandat 1640.820 kb on + strandat 1640.836 kb on - strandat 1640.836 kb on - strandat 1640.856 kb on + strandat 1640.856 kb on + strandat 1640.878 kb on - strandat 1640.908 kb on + strand, within BBR_RS17215at 1640.913 kb on + strand, within BBR_RS17215at 1640.915 kb on - strand, within BBR_RS17215at 1640.921 kb on - strand, within BBR_RS17215at 1640.925 kb on + strand, within BBR_RS17215at 1640.935 kb on + strand, within BBR_RS17215at 1640.962 kb on - strand, within BBR_RS17215at 1640.962 kb on - strand, within BBR_RS17215at 1641.021 kb on - strand, within BBR_RS17215at 1641.070 kb on + strand, within BBR_RS17215at 1641.146 kb on + strand, within BBR_RS17215at 1641.185 kb on - strand, within BBR_RS17215at 1641.216 kb on + strand, within BBR_RS17215at 1641.216 kb on + strand, within BBR_RS17215at 1641.224 kb on - strand, within BBR_RS17215at 1641.225 kb on + strand, within BBR_RS17215at 1641.246 kb on - strand, within BBR_RS17215at 1641.246 kb on - strand, within BBR_RS17215at 1641.262 kb on + strand, within BBR_RS17215at 1641.294 kb on + strand, within BBR_RS17215at 1641.301 kb on - strand, within BBR_RS17215at 1641.303 kb on - strand, within BBR_RS17215at 1641.305 kb on + strand, within BBR_RS17215at 1641.305 kb on + strand, within BBR_RS17215at 1641.338 kb on + strand, within BBR_RS17215at 1641.343 kb on - strand, within BBR_RS17215at 1641.346 kb on - strand, within BBR_RS17215at 1641.348 kb on + strand, within BBR_RS17215at 1641.348 kb on + strand, within BBR_RS17215at 1641.348 kb on + strand, within BBR_RS17215at 1641.348 kb on + strand, within BBR_RS17215at 1641.356 kb on - strand, within BBR_RS17215at 1641.356 kb on - strand, within BBR_RS17215at 1641.356 kb on - strand, within BBR_RS17215at 1641.356 kb on - strand, within BBR_RS17215at 1641.356 kb on - strand, within BBR_RS17215at 1641.356 kb on - strand, within BBR_RS17215at 1641.375 kb on + strand, within BBR_RS17215at 1641.399 kb on + strand, within BBR_RS17215at 1641.399 kb on + strand, within BBR_RS17215at 1641.400 kb on + strand, within BBR_RS17215at 1641.485 kb on + strand, within BBR_RS17215at 1641.513 kb on + strand, within BBR_RS17215at 1641.513 kb on + strand, within BBR_RS17215at 1641.513 kb on + strand, within BBR_RS17215at 1641.521 kb on - strand, within BBR_RS17215at 1641.521 kb on - strand, within BBR_RS17215at 1641.521 kb on - strand, within BBR_RS17215at 1641.553 kb on + strandat 1641.563 kb on - strandat 1641.575 kb on - strandat 1641.635 kb on - strandat 1641.643 kb on + strandat 1641.643 kb on + strandat 1641.658 kb on + strandat 1641.666 kb on - strandat 1641.688 kb on + strandat 1641.698 kb on + strandat 1641.718 kb on + strandat 1641.748 kb on + strand, within BBR_RS17220at 1641.750 kb on + strand, within BBR_RS17220at 1641.758 kb on - strand, within BBR_RS17220at 1641.766 kb on + strand, within BBR_RS17220at 1641.777 kb on - strand, within BBR_RS17220at 1641.780 kb on + strand, within BBR_RS17220at 1641.808 kb on - strand, within BBR_RS17220at 1641.869 kb on - strand, within BBR_RS17220at 1641.871 kb on + strand, within BBR_RS17220at 1641.873 kb on + strand, within BBR_RS17220at 1641.904 kb on + strand, within BBR_RS17220at 1641.906 kb on + strand, within BBR_RS17220at 1641.913 kb on - strand, within BBR_RS17220at 1641.967 kb on - strand, within BBR_RS17220at 1641.967 kb on - strand, within BBR_RS17220at 1642.003 kb on - strand, within BBR_RS17220at 1642.025 kb on - strandat 1642.026 kb on + strandat 1642.081 kb on + strandat 1642.086 kb on + strandat 1642.092 kb on + strandat 1642.145 kb on + strandat 1642.166 kb on - strandat 1642.246 kb on + strandat 1642.260 kb on - strandat 1642.306 kb on - strandat 1642.312 kb on + strandat 1642.321 kb on + strandat 1642.321 kb on + strandat 1642.349 kb on - strandat 1642.416 kb on - strandat 1642.436 kb on - strandat 1642.482 kb on + strand, within BBR_RS21000at 1642.518 kb on - strand, within BBR_RS21000at 1642.539 kb on + strand, within BBR_RS21000at 1642.539 kb on + strand, within BBR_RS21000at 1642.602 kb on - strandat 1642.639 kb on + strandat 1642.673 kb on + strandat 1642.675 kb on - strandat 1642.752 kb on + strand, within BBR_RS17225at 1642.774 kb on + strand, within BBR_RS17225at 1642.774 kb on + strand, within BBR_RS17225at 1642.822 kb on + strand, within BBR_RS17225at 1642.822 kb on + strand, within BBR_RS17225at 1642.830 kb on - strand, within BBR_RS17225at 1642.853 kb on - strand, within BBR_RS17225at 1642.903 kb on + strand, within BBR_RS17225at 1642.916 kb on - strand, within BBR_RS17225at 1642.988 kb on + strand, within BBR_RS17225at 1642.988 kb on + strand, within BBR_RS17225at 1642.999 kb on + strand, within BBR_RS17225at 1643.003 kb on + strand, within BBR_RS17225

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse2; day4
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1,640,689 - +0.8
1,640,689 - +1.2
1,640,694 - +0.1
1,640,694 - -1.7
1,640,737 - +3.4
1,640,737 - -0.7
1,640,739 + +2.6
1,640,803 - +0.1
1,640,820 + +1.4
1,640,836 - +0.5
1,640,836 - -0.1
1,640,856 + -1.6
1,640,856 + -1.4
1,640,878 - -0.6
1,640,908 + BBR_RS17215 0.12 -0.4
1,640,913 + BBR_RS17215 0.12 +1.8
1,640,915 - BBR_RS17215 0.13 +0.7
1,640,921 - BBR_RS17215 0.13 +0.4
1,640,925 + BBR_RS17215 0.14 +1.1
1,640,935 + BBR_RS17215 0.15 +2.2
1,640,962 - BBR_RS17215 0.19 -1.4
1,640,962 - BBR_RS17215 0.19 -0.1
1,641,021 - BBR_RS17215 0.26 -1.6
1,641,070 + BBR_RS17215 0.32 +0.4
1,641,146 + BBR_RS17215 0.41 +2.9
1,641,185 - BBR_RS17215 0.46 -0.4
1,641,216 + BBR_RS17215 0.50 -1.1
1,641,216 + BBR_RS17215 0.50 -2.3
1,641,224 - BBR_RS17215 0.51 +2.4
1,641,225 + BBR_RS17215 0.51 +2.0
1,641,246 - BBR_RS17215 0.54 +1.5
1,641,246 - BBR_RS17215 0.54 +0.4
1,641,262 + BBR_RS17215 0.56 +1.6
1,641,294 + BBR_RS17215 0.60 +1.5
1,641,301 - BBR_RS17215 0.60 +0.6
1,641,303 - BBR_RS17215 0.61 +1.4
1,641,305 + BBR_RS17215 0.61 +0.6
1,641,305 + BBR_RS17215 0.61 +0.4
1,641,338 + BBR_RS17215 0.65 -0.1
1,641,343 - BBR_RS17215 0.66 +2.8
1,641,346 - BBR_RS17215 0.66 +3.0
1,641,348 + BBR_RS17215 0.66 -0.9
1,641,348 + BBR_RS17215 0.66 -0.1
1,641,348 + BBR_RS17215 0.66 +0.7
1,641,348 + BBR_RS17215 0.66 -0.8
1,641,356 - BBR_RS17215 0.67 -1.5
1,641,356 - BBR_RS17215 0.67 -1.4
1,641,356 - BBR_RS17215 0.67 +1.0
1,641,356 - BBR_RS17215 0.67 -1.1
1,641,356 - BBR_RS17215 0.67 +0.0
1,641,356 - BBR_RS17215 0.67 +0.8
1,641,375 + BBR_RS17215 0.70 -0.1
1,641,399 + BBR_RS17215 0.72 +1.2
1,641,399 + BBR_RS17215 0.72 -0.3
1,641,400 + BBR_RS17215 0.73 +3.2
1,641,485 + BBR_RS17215 0.83 -0.0
1,641,513 + BBR_RS17215 0.87 +0.5
1,641,513 + BBR_RS17215 0.87 -2.7
1,641,513 + BBR_RS17215 0.87 +0.3
1,641,521 - BBR_RS17215 0.88 -2.5
1,641,521 - BBR_RS17215 0.88 -0.8
1,641,521 - BBR_RS17215 0.88 +2.3
1,641,553 + +3.2
1,641,563 - -0.7
1,641,575 - -1.7
1,641,635 - +1.3
1,641,643 + -0.5
1,641,643 + -1.0
1,641,658 + +2.9
1,641,666 - +3.2
1,641,688 + +2.5
1,641,698 + +1.2
1,641,718 + +0.3
1,641,748 + BBR_RS17220 0.17 +0.1
1,641,750 + BBR_RS17220 0.17 +2.0
1,641,758 - BBR_RS17220 0.19 -2.3
1,641,766 + BBR_RS17220 0.21 -1.8
1,641,777 - BBR_RS17220 0.24 +0.4
1,641,780 + BBR_RS17220 0.25 +0.3
1,641,808 - BBR_RS17220 0.33 -1.4
1,641,869 - BBR_RS17220 0.49 -0.8
1,641,871 + BBR_RS17220 0.49 +0.4
1,641,873 + BBR_RS17220 0.50 -2.2
1,641,904 + BBR_RS17220 0.58 +0.2
1,641,906 + BBR_RS17220 0.58 -0.5
1,641,913 - BBR_RS17220 0.60 -2.4
1,641,967 - BBR_RS17220 0.75 -2.2
1,641,967 - BBR_RS17220 0.75 +0.8
1,642,003 - BBR_RS17220 0.84 +0.3
1,642,025 - -1.2
1,642,026 + +1.5
1,642,081 + +1.6
1,642,086 + +0.9
1,642,092 + +1.5
1,642,145 + +0.6
1,642,166 - +1.1
1,642,246 + -0.5
1,642,260 - -0.5
1,642,306 - -0.4
1,642,312 + +0.4
1,642,321 + -0.8
1,642,321 + -0.1
1,642,349 - +0.2
1,642,416 - +0.1
1,642,436 - -1.7
1,642,482 + BBR_RS21000 0.26 -1.2
1,642,518 - BBR_RS21000 0.41 +1.1
1,642,539 + BBR_RS21000 0.50 +0.5
1,642,539 + BBR_RS21000 0.50 -0.9
1,642,602 - +0.4
1,642,639 + +0.2
1,642,673 + -1.2
1,642,675 - +0.4
1,642,752 + BBR_RS17225 0.12 +1.3
1,642,774 + BBR_RS17225 0.14 -1.4
1,642,774 + BBR_RS17225 0.14 +1.0
1,642,822 + BBR_RS17225 0.17 -0.5
1,642,822 + BBR_RS17225 0.17 -0.4
1,642,830 - BBR_RS17225 0.18 +0.7
1,642,853 - BBR_RS17225 0.19 +0.9
1,642,903 + BBR_RS17225 0.23 +0.9
1,642,916 - BBR_RS17225 0.24 -0.9
1,642,988 + BBR_RS17225 0.29 +0.7
1,642,988 + BBR_RS17225 0.29 +0.9
1,642,999 + BBR_RS17225 0.30 +1.3
1,643,003 + BBR_RS17225 0.30 +2.0

Or see this region's nucleotide sequence