Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17070

Experiment: diet=StandardDiet; sample=FecalPellet; mouse2; day4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; mouse2; day4
1,602,848	+				+1.0
1,602,875	+				+0.4
1,602,877	-				+1.3
1,602,890	-				-1.7
1,602,900	-				-1.5
1,602,938	+		BBR_RS17065	0.13	+0.1
1,602,986	+		BBR_RS17065	0.19	-1.7
1,603,115	+		BBR_RS17065	0.34	-1.2
1,603,123	-		BBR_RS17065	0.35	-0.6
1,603,132	-		BBR_RS17065	0.36	+2.1
1,603,191	+		BBR_RS17065	0.43	-1.6
1,603,197	-		BBR_RS17065	0.44	-0.5
1,603,232	-		BBR_RS17065	0.48	+1.0
1,603,301	+		BBR_RS17065	0.57	+1.1
1,603,332	-		BBR_RS17065	0.60	+0.9
1,603,364	-		BBR_RS17065	0.64	+2.3
1,603,383	+		BBR_RS17065	0.67	-1.5
1,603,391	-		BBR_RS17065	0.68	-0.4
1,603,425	-		BBR_RS17065	0.72	+1.3
1,603,425	-		BBR_RS17065	0.72	-1.9
1,603,425	-		BBR_RS17065	0.72	-2.2
1,603,425	-		BBR_RS17065	0.72	-0.5
1,603,425	-		BBR_RS17065	0.72	-0.1
1,603,427	+		BBR_RS17065	0.72	-0.1
1,603,461	-		BBR_RS17065	0.76	-1.5
1,603,495	+		BBR_RS17065	0.80	-0.5
1,603,503	-		BBR_RS17065	0.81	-2.4
1,603,523	+		BBR_RS17065	0.83	-1.2
1,603,541	+		BBR_RS17065	0.86	+0.2
1,603,561	-		BBR_RS17065	0.88	+0.5
1,603,590	-				+0.6
1,603,595	-				-0.2
1,603,595	-				-1.8
1,603,665	+				-2.0
1,603,739	+				+1.1
1,603,747	-				+0.7
1,603,857	-				-0.5
1,603,909	+				+0.8
1,603,915	-				+1.0
1,603,915	-				+2.9
1,603,936	-				+1.5
1,603,936	-				-0.9
1,603,996	-				-0.6
1,603,996	-				+0.5
1,604,002	-				+0.6
1,604,013	-				+1.8
1,604,013	-				+0.6
1,604,122	+		BBR_RS17070	0.14	+1.7
1,604,137	-		BBR_RS17070	0.14	+0.1
1,604,202	+		BBR_RS17070	0.17	+2.2
1,604,251	+		BBR_RS17070	0.19	-0.8
1,604,316	-		BBR_RS17070	0.22	-0.3
1,604,323	-		BBR_RS17070	0.22	+0.8
1,604,323	-		BBR_RS17070	0.22	+0.4
1,604,331	-		BBR_RS17070	0.23	-1.8
1,604,346	-		BBR_RS17070	0.23	+2.1
1,604,348	+		BBR_RS17070	0.23	+0.0
1,604,364	-		BBR_RS17070	0.24	-2.3
1,604,364	-		BBR_RS17070	0.24	+0.4
1,604,484	-		BBR_RS17070	0.29	-1.6
1,604,489	-		BBR_RS17070	0.29	-2.2
1,604,489	-		BBR_RS17070	0.29	-1.9
1,604,491	-		BBR_RS17070	0.29	+1.3
1,604,522	-		BBR_RS17070	0.31	+2.5
1,604,552	-		BBR_RS17070	0.32	+3.6
1,604,569	-		BBR_RS17070	0.33	+0.7
1,604,583	-		BBR_RS17070	0.33	-1.4
1,604,585	+		BBR_RS17070	0.33	-0.5
1,604,607	+		BBR_RS17070	0.34	+0.4
1,604,628	+		BBR_RS17070	0.35	-2.0
1,604,628	+		BBR_RS17070	0.35	+1.2
1,604,643	+		BBR_RS17070	0.36	+3.4
1,604,646	-		BBR_RS17070	0.36	+0.2
1,604,721	-		BBR_RS17070	0.39	+0.6
1,604,763	+		BBR_RS17070	0.41	-1.0
1,604,763	+		BBR_RS17070	0.41	+2.2
1,604,782	-		BBR_RS17070	0.42	-1.1
1,604,868	+		BBR_RS17070	0.45	+1.1
1,604,936	-		BBR_RS17070	0.48	+0.7
1,605,020	+		BBR_RS17070	0.52	-1.5
1,605,045	-		BBR_RS17070	0.53	+0.6
1,605,054	-		BBR_RS17070	0.53	+3.5
1,605,193	+		BBR_RS17070	0.59	-1.5
1,605,216	+		BBR_RS17070	0.60	+2.1
1,605,374	-		BBR_RS17070	0.67	+2.3
1,605,384	+		BBR_RS17070	0.67	+0.4
1,605,435	-		BBR_RS17070	0.70	-0.8
1,605,435	-		BBR_RS17070	0.70	+1.1
1,605,435	-		BBR_RS17070	0.70	+0.4
1,605,439	+		BBR_RS17070	0.70	-1.3
1,605,467	-		BBR_RS17070	0.71	-0.8
1,605,471	+		BBR_RS17070	0.71	-0.1
1,605,479	-		BBR_RS17070	0.71	+1.9
1,605,498	-		BBR_RS17070	0.72	+2.3
1,605,498	-		BBR_RS17070	0.72	+0.7
1,605,542	+		BBR_RS17070	0.74	+0.1
1,605,551	-		BBR_RS17070	0.75	+2.0
1,605,567	+		BBR_RS17070	0.75	+0.7
1,605,575	+		BBR_RS17070	0.76	-1.7
1,605,580	+		BBR_RS17070	0.76	+2.1
1,605,588	-		BBR_RS17070	0.76	+1.0
1,605,594	+		BBR_RS17070	0.76	+0.9
1,605,610	+		BBR_RS17070	0.77	+3.4
1,605,624	+		BBR_RS17070	0.78	-0.2
1,605,700	+		BBR_RS17070	0.81	+0.6
1,605,828	+		BBR_RS17070	0.86	+0.9
1,606,011	-				+1.8
1,606,014	-				+0.9
1,606,064	+				-0.3
1,606,067	-				+1.9
1,606,072	-				+1.4
1,606,084	-				-0.4
1,606,084	-				-1.4
1,606,084	-				-0.6
1,606,101	-				+1.6
1,606,101	-				-0.3
1,606,107	+				-0.6
1,606,159	-				+0.8
1,606,196	-				-2.1
1,606,196	-				-1.6
1,606,196	-				+0.9
1,606,223	-				-1.4
1,606,223	-				-1.1
1,606,263	-				+1.5
1,606,279	+		BBR_RS17075	0.12	-2.0
1,606,309	+		BBR_RS17075	0.15	+0.1
1,606,387	-		BBR_RS17075	0.24	+0.3
1,606,392	-		BBR_RS17075	0.24	+1.8
1,606,397	-		BBR_RS17075	0.25	-0.5
1,606,434	-		BBR_RS17075	0.29	-1.8
1,606,468	+		BBR_RS17075	0.33	+2.9
1,606,468	+		BBR_RS17075	0.33	+0.9
1,606,468	-		BBR_RS17075	0.33	+3.1
1,606,476	-		BBR_RS17075	0.34	+1.4
1,606,476	-		BBR_RS17075	0.34	-2.0
1,606,535	+		BBR_RS17075	0.40	+0.5
1,606,564	+		BBR_RS17075	0.43	+1.2
1,606,616	+		BBR_RS17075	0.49	-2.6
1,606,629	+		BBR_RS17075	0.51	+2.6
1,606,681	+		BBR_RS17075	0.56	+0.5
1,606,689	-		BBR_RS17075	0.57	+0.1
1,606,691	+		BBR_RS17075	0.58	+1.5
1,606,691	+		BBR_RS17075	0.58	+0.5
1,606,701	+		BBR_RS17075	0.59	-0.3
1,606,721	+		BBR_RS17075	0.61	+0.9
1,606,750	-		BBR_RS17075	0.64	+0.5
1,606,768	-		BBR_RS17075	0.66	+0.7
1,606,787	+		BBR_RS17075	0.68	-0.1
1,606,806	+		BBR_RS17075	0.70	-1.8
1,606,828	-		BBR_RS17075	0.73	+2.2
1,606,932	+		BBR_RS17075	0.85	+3.0
1,606,944	+		BBR_RS17075	0.86	+0.0
1,606,997	+				+0.3
1,607,005	-				-0.4
1,607,009	-				-2.1
1,607,049	+				-0.7