Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS14045

Experiment: diet=StandardDiet; sample=FecalPellet; mouse2; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS14035 and BBR_RS14040 are separated by 123 nucleotidesBBR_RS14040 and BBR_RS14045 are separated by 289 nucleotidesBBR_RS14045 and BBR_RS14050 are separated by 21 nucleotidesBBR_RS14050 and BBR_RS14055 are separated by 6 nucleotides BBR_RS14035: BBR_RS14035 - HAD family phosphatase, at 925,877 to 926,524 _RS14035 BBR_RS14040: BBR_RS14040 - GNAT family N-acetyltransferase, at 926,648 to 927,123 _RS14040 BBR_RS14045: BBR_RS14045 - GntR family transcriptional regulator, at 927,413 to 927,787 _RS14045 BBR_RS14050: BBR_RS14050 - ABC transporter ATP-binding protein, at 927,809 to 928,729 _RS14050 BBR_RS14055: BBR_RS14055 - ABC-2 transporter permease, at 928,736 to 929,449 _RS14055 Position (kb) 927 928Strain fitness (log2 ratio) -2 -1 0 1 2 3at 926.419 kb on + strand, within BBR_RS14035at 926.420 kb on - strand, within BBR_RS14035at 926.420 kb on - strand, within BBR_RS14035at 926.424 kb on + strand, within BBR_RS14035at 926.427 kb on - strand, within BBR_RS14035at 926.455 kb on - strand, within BBR_RS14035at 926.508 kb on + strandat 926.532 kb on + strandat 926.541 kb on + strandat 926.619 kb on + strandat 926.639 kb on + strandat 926.642 kb on - strandat 926.664 kb on - strandat 926.731 kb on + strand, within BBR_RS14040at 926.814 kb on - strand, within BBR_RS14040at 926.814 kb on - strand, within BBR_RS14040at 926.852 kb on + strand, within BBR_RS14040at 926.977 kb on + strand, within BBR_RS14040at 926.987 kb on + strand, within BBR_RS14040at 926.987 kb on + strand, within BBR_RS14040at 926.992 kb on + strand, within BBR_RS14040at 926.995 kb on - strand, within BBR_RS14040at 927.019 kb on + strand, within BBR_RS14040at 927.031 kb on + strand, within BBR_RS14040at 927.058 kb on + strand, within BBR_RS14040at 927.058 kb on + strand, within BBR_RS14040at 927.192 kb on + strandat 927.197 kb on + strandat 927.223 kb on - strandat 927.229 kb on + strandat 927.237 kb on - strandat 927.237 kb on - strandat 927.412 kb on + strandat 927.437 kb on - strandat 927.438 kb on + strandat 927.487 kb on + strand, within BBR_RS14045at 927.555 kb on + strand, within BBR_RS14045at 927.555 kb on + strand, within BBR_RS14045at 927.608 kb on + strand, within BBR_RS14045at 927.673 kb on + strand, within BBR_RS14045at 927.673 kb on + strand, within BBR_RS14045at 927.746 kb on + strand, within BBR_RS14045at 927.746 kb on + strand, within BBR_RS14045at 927.747 kb on + strand, within BBR_RS14045at 927.747 kb on + strand, within BBR_RS14045at 927.747 kb on + strand, within BBR_RS14045at 927.781 kb on + strandat 927.858 kb on + strandat 927.868 kb on + strandat 927.899 kb on + strandat 927.909 kb on + strand, within BBR_RS14050at 927.924 kb on - strand, within BBR_RS14050at 927.957 kb on + strand, within BBR_RS14050at 927.967 kb on + strand, within BBR_RS14050at 927.967 kb on + strand, within BBR_RS14050at 927.984 kb on + strand, within BBR_RS14050at 928.033 kb on - strand, within BBR_RS14050at 928.082 kb on - strand, within BBR_RS14050at 928.102 kb on - strand, within BBR_RS14050at 928.109 kb on + strand, within BBR_RS14050at 928.131 kb on - strand, within BBR_RS14050at 928.146 kb on - strand, within BBR_RS14050at 928.164 kb on + strand, within BBR_RS14050at 928.185 kb on + strand, within BBR_RS14050at 928.185 kb on + strand, within BBR_RS14050at 928.185 kb on + strand, within BBR_RS14050at 928.193 kb on - strand, within BBR_RS14050at 928.298 kb on + strand, within BBR_RS14050at 928.328 kb on - strand, within BBR_RS14050at 928.376 kb on - strand, within BBR_RS14050at 928.386 kb on + strand, within BBR_RS14050at 928.386 kb on + strand, within BBR_RS14050at 928.396 kb on + strand, within BBR_RS14050at 928.396 kb on + strand, within BBR_RS14050at 928.404 kb on - strand, within BBR_RS14050at 928.448 kb on - strand, within BBR_RS14050at 928.468 kb on + strand, within BBR_RS14050at 928.468 kb on + strand, within BBR_RS14050at 928.476 kb on - strand, within BBR_RS14050at 928.513 kb on + strand, within BBR_RS14050at 928.566 kb on + strand, within BBR_RS14050at 928.569 kb on + strand, within BBR_RS14050at 928.605 kb on + strand, within BBR_RS14050at 928.614 kb on + strand, within BBR_RS14050at 928.665 kb on + strandat 928.753 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse2; day4
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926,419 + BBR_RS14035 0.84 -0.2
926,420 - BBR_RS14035 0.84 -1.0
926,420 - BBR_RS14035 0.84 +2.0
926,424 + BBR_RS14035 0.84 +3.3
926,427 - BBR_RS14035 0.85 +1.3
926,455 - BBR_RS14035 0.89 +0.7
926,508 + +2.7
926,532 + +0.6
926,541 + +0.5
926,619 + +0.3
926,639 + -0.9
926,642 - -1.9
926,664 - -0.0
926,731 + BBR_RS14040 0.17 +1.7
926,814 - BBR_RS14040 0.35 -1.7
926,814 - BBR_RS14040 0.35 -2.0
926,852 + BBR_RS14040 0.43 +0.1
926,977 + BBR_RS14040 0.69 -1.3
926,987 + BBR_RS14040 0.71 -0.1
926,987 + BBR_RS14040 0.71 -0.6
926,992 + BBR_RS14040 0.72 +0.9
926,995 - BBR_RS14040 0.73 -1.2
927,019 + BBR_RS14040 0.78 +0.3
927,031 + BBR_RS14040 0.80 -1.0
927,058 + BBR_RS14040 0.86 +1.4
927,058 + BBR_RS14040 0.86 -0.5
927,192 + -0.5
927,197 + -0.1
927,223 - -0.1
927,229 + +1.0
927,237 - -0.7
927,237 - -2.3
927,412 + -0.9
927,437 - -1.9
927,438 + -1.4
927,487 + BBR_RS14045 0.20 +0.6
927,555 + BBR_RS14045 0.38 +3.5
927,555 + BBR_RS14045 0.38 +3.5
927,608 + BBR_RS14045 0.52 +1.2
927,673 + BBR_RS14045 0.69 +1.6
927,673 + BBR_RS14045 0.69 -0.6
927,746 + BBR_RS14045 0.89 -0.1
927,746 + BBR_RS14045 0.89 +3.5
927,747 + BBR_RS14045 0.89 +0.4
927,747 + BBR_RS14045 0.89 +2.1
927,747 + BBR_RS14045 0.89 +0.6
927,781 + +0.9
927,858 + -0.1
927,868 + -0.5
927,899 + -2.0
927,909 + BBR_RS14050 0.11 +1.1
927,924 - BBR_RS14050 0.12 -0.6
927,957 + BBR_RS14050 0.16 +0.3
927,967 + BBR_RS14050 0.17 +0.6
927,967 + BBR_RS14050 0.17 -0.2
927,984 + BBR_RS14050 0.19 -1.0
928,033 - BBR_RS14050 0.24 -0.2
928,082 - BBR_RS14050 0.30 +1.4
928,102 - BBR_RS14050 0.32 +1.3
928,109 + BBR_RS14050 0.33 +0.1
928,131 - BBR_RS14050 0.35 -2.2
928,146 - BBR_RS14050 0.37 +0.5
928,164 + BBR_RS14050 0.39 -0.9
928,185 + BBR_RS14050 0.41 +3.5
928,185 + BBR_RS14050 0.41 +2.5
928,185 + BBR_RS14050 0.41 +3.2
928,193 - BBR_RS14050 0.42 +0.2
928,298 + BBR_RS14050 0.53 +1.3
928,328 - BBR_RS14050 0.56 +0.1
928,376 - BBR_RS14050 0.62 -1.2
928,386 + BBR_RS14050 0.63 +1.7
928,386 + BBR_RS14050 0.63 +0.4
928,396 + BBR_RS14050 0.64 +0.4
928,396 + BBR_RS14050 0.64 +0.9
928,404 - BBR_RS14050 0.65 -0.6
928,448 - BBR_RS14050 0.69 -1.7
928,468 + BBR_RS14050 0.72 +0.0
928,468 + BBR_RS14050 0.72 -1.0
928,476 - BBR_RS14050 0.72 +1.9
928,513 + BBR_RS14050 0.76 +1.3
928,566 + BBR_RS14050 0.82 -2.5
928,569 + BBR_RS14050 0.83 +1.7
928,605 + BBR_RS14050 0.86 +0.5
928,614 + BBR_RS14050 0.87 +0.3
928,665 + +0.4
928,753 - +0.6

Or see this region's nucleotide sequence