Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3670

Experiment: Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.025 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.025 mM
4,758,349	-		BT3668	0.55	-2.1
4,758,349	-		BT3668	0.55	-2.4
4,758,352	+		BT3668	0.56	-1.5
4,758,422	+		BT3668	0.65	-1.5
4,758,425	+		BT3668	0.66	-1.1
4,758,426	-		BT3668	0.66	-0.2
4,758,460	+		BT3668	0.70	+1.5
4,758,463	-		BT3668	0.71	+0.3
4,758,465	-		BT3668	0.71	+0.9
4,758,499	+		BT3668	0.76	-2.1
4,758,499	+		BT3668	0.76	-2.4
4,758,508	+		BT3668	0.77	-0.8
4,758,524	+		BT3668	0.79	-2.1
4,758,553	+		BT3668	0.83	-0.1
4,758,584	+		BT3668	0.87	-2.7
4,758,587	+		BT3668	0.88	-1.7
4,758,756	-				-1.7
4,758,758	-				-0.4
4,758,758	-				-1.4
4,758,768	-				-0.9
4,758,867	-		BT3669	0.18	-4.4
4,759,131	-		BT3669	0.63	-0.6
4,759,131	-		BT3669	0.63	-2.0
4,759,131	-		BT3669	0.63	-1.6
4,759,131	-		BT3669	0.63	-2.1
4,759,223	+		BT3669	0.79	-2.7
4,759,266	-		BT3669	0.86	-1.9
4,759,270	+		BT3669	0.87	-2.7
4,759,298	+				-4.0
4,759,347	-				-1.7
4,759,356	+				+0.9
4,759,357	-				-1.7
4,759,408	+				-2.0
4,759,409	-				-1.5
4,759,414	-				-1.8
4,759,526	+				-1.5
4,759,545	-				-1.9
4,759,549	-				-1.7
4,759,549	-				-0.3
4,759,549	-				-0.5
4,759,549	-				-1.1
4,759,619	+				-1.1
4,759,620	-				-1.6
4,759,626	+				-1.2
4,759,644	-				-0.1
4,759,682	+		BT3670	0.11	-0.1
4,759,713	-		BT3670	0.12	-1.1
4,759,715	+		BT3670	0.12	-1.0
4,759,715	+		BT3670	0.12	-0.1
4,759,724	-		BT3670	0.12	-0.4
4,759,816	-		BT3670	0.15	-2.9
4,759,816	-		BT3670	0.15	-2.1
4,759,974	-		BT3670	0.20	-1.5
4,760,033	-		BT3670	0.22	-0.1
4,760,061	-		BT3670	0.23	-0.1
4,760,061	-		BT3670	0.23	-3.3
4,760,103	+		BT3670	0.24	-2.9
4,760,124	+		BT3670	0.25	-0.5
4,760,124	+		BT3670	0.25	-2.4
4,760,124	+		BT3670	0.25	-0.1
4,760,166	+		BT3670	0.26	-1.3
4,760,218	-		BT3670	0.28	-0.8
4,760,271	-		BT3670	0.29	-3.4
4,760,333	-		BT3670	0.31	-1.4
4,760,355	+		BT3670	0.32	-1.1
4,760,359	-		BT3670	0.32	-1.4
4,760,381	+		BT3670	0.33	-1.9
4,760,382	-		BT3670	0.33	-0.1
4,760,450	-		BT3670	0.35	-1.7
4,760,451	+		BT3670	0.35	-1.1
4,760,472	+		BT3670	0.36	-1.9
4,760,472	+		BT3670	0.36	-1.7
4,760,475	+		BT3670	0.36	-1.6
4,760,476	-		BT3670	0.36	+0.9
4,760,483	+		BT3670	0.36	-0.1
4,760,494	-		BT3670	0.36	-2.1
4,760,508	-		BT3670	0.37	-1.1
4,760,562	+		BT3670	0.39	-0.1
4,760,562	+		BT3670	0.39	-1.9
4,760,563	-		BT3670	0.39	-1.1
4,760,609	+		BT3670	0.40	-3.7
4,760,610	-		BT3670	0.40	-3.1
4,760,620	+		BT3670	0.40	-1.7
4,760,674	+		BT3670	0.42	-1.4
4,760,674	+		BT3670	0.42	-0.1
4,760,675	-		BT3670	0.42	-1.9
4,760,675	-		BT3670	0.42	-0.8
4,760,725	-		BT3670	0.44	-2.0
4,760,728	+		BT3670	0.44	-1.4
4,760,730	+		BT3670	0.44	-1.1
4,760,730	+		BT3670	0.44	-1.5
4,760,731	-		BT3670	0.44	-2.0
4,760,742	-		BT3670	0.44	-3.1
4,760,786	+		BT3670	0.46	-0.1
4,760,786	+		BT3670	0.46	-4.7
4,760,797	+		BT3670	0.46	-2.1
4,760,797	+		BT3670	0.46	+1.3
4,760,798	-		BT3670	0.46	-4.6
4,760,798	-		BT3670	0.46	-0.1
4,760,831	-		BT3670	0.47	+0.9
4,760,831	-		BT3670	0.47	-1.1
4,760,854	+		BT3670	0.48	-1.1
4,760,854	+		BT3670	0.48	-1.8
4,760,855	-		BT3670	0.48	-2.4
4,760,860	-		BT3670	0.48	-1.4
4,760,866	-		BT3670	0.48	-0.9
4,760,951	-		BT3670	0.51	-0.1
4,760,965	-		BT3670	0.51	-2.0
4,761,022	+		BT3670	0.53	-1.1
4,761,023	-		BT3670	0.53	-1.1
4,761,121	+		BT3670	0.56	-1.7
4,761,129	+		BT3670	0.57	-0.1
4,761,129	+		BT3670	0.57	-0.1
4,761,129	+		BT3670	0.57	-1.1
4,761,129	+		BT3670	0.57	-2.4
4,761,130	-		BT3670	0.57	-2.3
4,761,130	-		BT3670	0.57	-0.1
4,761,133	+		BT3670	0.57	-2.6
4,761,133	-		BT3670	0.57	-0.9
4,761,134	-		BT3670	0.57	-1.5
4,761,134	-		BT3670	0.57	-2.9
4,761,134	-		BT3670	0.57	-0.1
4,761,135	+		BT3670	0.57	-3.4
4,761,136	-		BT3670	0.57	-3.1
4,761,136	-		BT3670	0.57	-1.9
4,761,136	-		BT3670	0.57	-4.9
4,761,159	+		BT3670	0.58	-1.8
4,761,213	-		BT3670	0.59	-1.5
4,761,213	-		BT3670	0.59	-1.7
4,761,235	-		BT3670	0.60	-1.7
4,761,235	-		BT3670	0.60	-2.1
4,761,275	-		BT3670	0.61	-0.1
4,761,302	+		BT3670	0.62	-2.9
4,761,318	+		BT3670	0.63	-0.1
4,761,354	-		BT3670	0.64	-1.4
4,761,360	-		BT3670	0.64	-1.7
4,761,389	-		BT3670	0.65	-2.2
4,761,503	+		BT3670	0.69	-0.1
4,761,506	+		BT3670	0.69	-1.1
4,761,578	+		BT3670	0.71	-1.1
4,761,578	+		BT3670	0.71	-0.9
4,761,578	+		BT3670	0.71	-0.1
4,761,579	-		BT3670	0.71	+1.8
4,761,611	+		BT3670	0.72	-2.9
4,761,612	-		BT3670	0.72	-0.7
4,761,658	-		BT3670	0.74	-1.9
4,761,705	+		BT3670	0.75	-0.1
4,761,715	+		BT3670	0.75	-3.4
4,761,716	-		BT3670	0.75	+2.2
4,761,716	-		BT3670	0.75	-0.1
4,761,740	-		BT3670	0.76	-0.7
4,761,746	-		BT3670	0.76	-2.4
4,761,747	+		BT3670	0.76	+0.4
4,761,747	+		BT3670	0.76	-0.1
4,761,747	+		BT3670	0.76	-2.7
4,761,748	-		BT3670	0.76	+1.2
4,761,776	-		BT3670	0.77	-2.8
4,761,788	-		BT3670	0.78	-2.1
4,761,871	-		BT3670	0.80	-1.9
4,761,880	-		BT3670	0.81	-2.5
4,762,005	-		BT3670	0.85	-2.6
4,762,034	-		BT3670	0.86	-1.1
4,762,043	+		BT3670	0.86	-3.0
4,762,043	+		BT3670	0.86	-1.1
4,762,072	+		BT3670	0.87	-1.2
4,762,073	-		BT3670	0.87	-2.4
4,762,074	+		BT3670	0.87	+2.5
4,762,075	-		BT3670	0.87	-0.1
4,762,075	-		BT3670	0.87	-1.4
4,762,084	+		BT3670	0.87	-1.9
4,762,085	-		BT3670	0.87	-0.8
4,762,106	+		BT3670	0.88	-0.1
4,762,106	+		BT3670	0.88	-0.1
4,762,113	+		BT3670	0.88	+0.2
4,762,219	+				-0.7
4,762,252	-				-1.8
4,762,314	+				-0.1
4,762,365	-				-1.1
4,762,461	+				-0.7
4,762,527	-				-1.4
4,762,529	+				-0.4
4,762,530	-				-0.1
4,762,548	-				-0.5
4,762,556	+				-1.1
4,762,604	+				-1.6
4,762,619	-				-2.6
4,762,647	+				-1.8
4,762,648	-				-0.5
4,762,661	-				+0.1
4,762,678	+				-3.1
4,762,679	-				-0.8
4,762,680	+				+0.9
4,762,681	-				-1.1
4,762,681	-				-1.9
4,762,825	-		BT3671	0.15	-1.1
4,762,825	-		BT3671	0.15	-2.4
4,762,825	-		BT3671	0.15	-1.6
4,762,828	-		BT3671	0.15	-2.4
4,762,849	+		BT3671	0.16	-3.8
4,762,849	+		BT3671	0.16	-1.7
4,762,849	+		BT3671	0.16	-4.4
4,762,851	+		BT3671	0.16	-2.7
4,762,860	+		BT3671	0.17	-2.1
4,762,860	+		BT3671	0.17	-1.0
4,762,860	+		BT3671	0.17	-0.9
4,762,861	-		BT3671	0.17	-3.1
4,762,861	-		BT3671	0.17	-0.3
4,762,861	-		BT3671	0.17	-0.6
4,762,861	-		BT3671	0.17	-2.7
4,762,862	+		BT3671	0.17	+2.2
4,762,862	+		BT3671	0.17	-1.9
4,762,863	-		BT3671	0.17	-1.3
4,762,863	-		BT3671	0.17	-2.1
4,762,879	-		BT3671	0.18	-3.1
4,762,900	+		BT3671	0.19	-1.1
4,762,900	+		BT3671	0.19	-2.7
4,762,900	+		BT3671	0.19	-1.4
4,762,901	-		BT3671	0.19	+1.2
4,762,901	-		BT3671	0.19	-0.1
4,762,940	+		BT3671	0.21	-1.4
4,762,994	-		BT3671	0.23	-1.1
4,763,025	+		BT3671	0.25	-0.1
4,763,040	+		BT3671	0.25	-2.0
4,763,046	-		BT3671	0.26	-1.0
4,763,078	-		BT3671	0.27	-1.7
4,763,110	+		BT3671	0.29	-0.1
4,763,119	-		BT3671	0.29	-0.9
4,763,119	-		BT3671	0.29	-0.5
4,763,143	+		BT3671	0.30	-0.5
4,763,145	+		BT3671	0.30	-0.7
4,763,145	+		BT3671	0.30	-0.9
4,763,152	-		BT3671	0.31	-0.1
4,763,153	+		BT3671	0.31	+2.7
4,763,210	+		BT3671	0.34	-1.6
4,763,210	+		BT3671	0.34	-1.1
4,763,248	-		BT3671	0.35	+0.4
4,763,311	+		BT3671	0.38	-1.1
4,763,312	-		BT3671	0.38	-0.8
4,763,364	+		BT3671	0.41	-2.1
4,763,389	+		BT3671	0.42	-0.1
4,763,400	+		BT3671	0.43	-0.1