Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2968

Experiment: Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.025 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.025 mM
3,739,773	+		BT2967	0.56	-0.7
3,739,778	+		BT2967	0.56	-1.0
3,739,897	+		BT2967	0.62	-2.1
3,739,898	-		BT2967	0.62	-0.5
3,739,911	-		BT2967	0.63	-2.3
3,739,924	+		BT2967	0.63	-2.1
3,739,991	+		BT2967	0.67	+1.1
3,739,992	-		BT2967	0.67	-1.3
3,739,992	-		BT2967	0.67	-1.7
3,740,028	-		BT2967	0.69	-2.7
3,740,131	+		BT2967	0.74	-0.3
3,740,131	+		BT2967	0.74	+0.1
3,740,132	-		BT2967	0.74	+0.7
3,740,135	-		BT2967	0.74	-1.6
3,740,141	+		BT2967	0.74	-1.3
3,740,161	+		BT2967	0.75	+1.0
3,740,205	+		BT2967	0.78	-2.1
3,740,272	+		BT2967	0.81	-1.4
3,740,272	+		BT2967	0.81	+0.8
3,740,272	+		BT2967	0.81	-1.4
3,740,276	+		BT2967	0.81	-2.2
3,740,276	+		BT2967	0.81	-2.5
3,740,278	+		BT2967	0.81	-1.0
3,740,297	-		BT2967	0.82	-3.1
3,740,301	+		BT2967	0.83	-1.2
3,740,301	+		BT2967	0.83	-1.1
3,740,302	-		BT2967	0.83	-0.3
3,740,318	+		BT2967	0.84	-1.3
3,740,318	+		BT2967	0.84	-1.9
3,740,340	+		BT2967	0.85	-0.8
3,740,340	+		BT2967	0.85	-1.4
3,740,341	-		BT2967	0.85	-0.3
3,740,372	+		BT2967	0.86	-0.9
3,740,374	+		BT2967	0.86	-0.3
3,740,375	-		BT2967	0.86	-2.7
3,740,376	+		BT2967	0.86	-1.9
3,740,398	-		BT2967	0.88	+1.8
3,740,398	-		BT2967	0.88	+0.3
3,740,452	+				-3.2
3,740,452	+				-0.6
3,740,481	+				-2.4
3,740,487	+				-1.1
3,740,553	-				-0.3
3,740,591	+				-1.1
3,740,593	+				-1.9
3,740,638	+				-0.3
3,740,665	+				-2.1
3,740,673	+				-2.0
3,740,673	+				-0.3
3,740,763	+				-1.7
3,740,763	+				+0.9
3,740,774	+				-1.1
3,740,774	+				-0.9
3,740,883	+				-3.1
3,740,966	+		BT2968	0.10	-3.7
3,740,970	+		BT2968	0.10	-2.6
3,740,971	-		BT2968	0.10	-2.9
3,740,971	-		BT2968	0.10	-1.8
3,741,051	+		BT2968	0.13	-2.9
3,741,113	+		BT2968	0.15	-1.3
3,741,137	+		BT2968	0.15	-1.9
3,741,190	-		BT2968	0.17	+2.2
3,741,193	+		BT2968	0.17	-1.3
3,741,237	+		BT2968	0.19	-1.5
3,741,237	+		BT2968	0.19	-3.1
3,741,239	+		BT2968	0.19	-0.9
3,741,254	-		BT2968	0.19	-0.3
3,741,305	+		BT2968	0.21	-1.5
3,741,334	+		BT2968	0.22	-1.7
3,741,334	+		BT2968	0.22	-3.9
3,741,362	+		BT2968	0.23	-1.1
3,741,393	+		BT2968	0.24	-1.1
3,741,506	+		BT2968	0.27	+1.7
3,741,506	+		BT2968	0.27	-1.2
3,741,507	-		BT2968	0.27	-1.9
3,741,508	+		BT2968	0.27	-1.9
3,741,508	+		BT2968	0.27	-2.5
3,741,508	+		BT2968	0.27	+1.7
3,741,633	+		BT2968	0.31	-0.9
3,741,669	+		BT2968	0.32	-2.7
3,741,670	-		BT2968	0.32	-0.3
3,741,688	+		BT2968	0.33	-1.1
3,741,704	+		BT2968	0.33	-1.9
3,741,744	+		BT2968	0.35	+0.5
3,741,753	+		BT2968	0.35	-2.3
3,741,763	+		BT2968	0.35	-2.3
3,741,763	+		BT2968	0.35	-4.7
3,741,764	-		BT2968	0.35	-1.3
3,741,764	-		BT2968	0.35	-4.8
3,741,823	+		BT2968	0.37	-0.4
3,741,987	-		BT2968	0.42	-1.7
3,741,992	+		BT2968	0.42	-2.3
3,741,992	+		BT2968	0.42	-1.4
3,742,017	+		BT2968	0.43	-1.6
3,742,076	+		BT2968	0.45	-1.9
3,742,077	-		BT2968	0.45	-1.3
3,742,089	+		BT2968	0.46	-2.7
3,742,099	+		BT2968	0.46	-2.4
3,742,099	+		BT2968	0.46	-2.7
3,742,127	+		BT2968	0.47	+0.5
3,742,232	+		BT2968	0.50	-1.3
3,742,232	+		BT2968	0.50	-1.1
3,742,271	+		BT2968	0.51	-1.8
3,742,271	+		BT2968	0.51	-1.3
3,742,281	+		BT2968	0.52	-0.3
3,742,282	-		BT2968	0.52	-2.8
3,742,282	-		BT2968	0.52	-0.3
3,742,283	+		BT2968	0.52	-0.3
3,742,284	-		BT2968	0.52	-3.2
3,742,304	+		BT2968	0.52	-0.3
3,742,381	+		BT2968	0.55	-1.6
3,742,382	-		BT2968	0.55	-4.2
3,742,382	-		BT2968	0.55	-0.0
3,742,401	+		BT2968	0.55	-0.3
3,742,416	+		BT2968	0.56	-1.6
3,742,416	+		BT2968	0.56	-2.6
3,742,416	+		BT2968	0.56	-2.2
3,742,416	+		BT2968	0.56	+0.2
3,742,417	-		BT2968	0.56	-1.9
3,742,417	-		BT2968	0.56	-3.8
3,742,439	+		BT2968	0.57	-1.3
3,742,447	-		BT2968	0.57	-2.1
3,742,493	+		BT2968	0.58	+1.0
3,742,497	+		BT2968	0.58	-1.0
3,742,498	-		BT2968	0.58	-1.1
3,742,517	+		BT2968	0.59	-1.9
3,742,519	+		BT2968	0.59	+1.8
3,742,552	+		BT2968	0.60	-0.3
3,742,562	+		BT2968	0.61	-2.7
3,742,562	+		BT2968	0.61	-1.3
3,742,595	+		BT2968	0.62	-0.3
3,742,627	+		BT2968	0.63	-3.7
3,742,693	-		BT2968	0.65	-1.9
3,742,720	+		BT2968	0.66	-1.8
3,742,764	-		BT2968	0.67	-1.3
3,742,764	-		BT2968	0.67	-0.3
3,742,834	+		BT2968	0.69	-3.2
3,742,902	+		BT2968	0.71	-0.6
3,742,911	+		BT2968	0.72	-0.8
3,742,912	-		BT2968	0.72	-0.4
3,742,913	+		BT2968	0.72	-1.9
3,742,913	+		BT2968	0.72	-3.4
3,742,914	-		BT2968	0.72	-0.3
3,742,914	-		BT2968	0.72	-1.3
3,742,914	-		BT2968	0.72	-3.1
3,742,942	+		BT2968	0.73	-2.9
3,742,956	+		BT2968	0.73	-2.3
3,742,970	+		BT2968	0.73	-1.7
3,743,016	+		BT2968	0.75	-1.8
3,743,026	+		BT2968	0.75	-1.3
3,743,031	+		BT2968	0.75	-2.3
3,743,032	+		BT2968	0.75	-2.7
3,743,077	+		BT2968	0.77	-1.6
3,743,091	+		BT2968	0.77	-1.3
3,743,177	-		BT2968	0.80	-1.3
3,743,177	-		BT2968	0.80	-0.4
3,743,177	-		BT2968	0.80	+1.7
3,743,184	+		BT2968	0.80	-1.3
3,743,185	-		BT2968	0.80	-1.3
3,743,185	-		BT2968	0.80	-1.9
3,743,185	-		BT2968	0.80	-1.0
3,743,190	+		BT2968	0.80	-2.9
3,743,190	+		BT2968	0.80	-2.3
3,743,311	-		BT2968	0.84	-1.3
3,743,317	+		BT2968	0.84	-2.7
3,743,318	-		BT2968	0.84	-2.3
3,743,343	+		BT2968	0.85	-2.2
3,743,344	-		BT2968	0.85	-0.3
3,743,389	-		BT2968	0.87	-1.3
3,743,518	-				-2.7
3,743,518	-				-0.3
3,743,619	+				-1.2
3,743,620	-				-0.6
3,743,750	+				-1.0
3,743,750	+				+1.0
3,743,750	+				-2.1
3,743,831	+				-3.3
3,743,835	+				-2.3
3,743,914	+				-0.3
3,744,000	-				-2.7
3,744,023	+				-3.5
3,744,038	+				-0.9
3,744,038	+				-2.1
3,744,038	+				-2.1
3,744,039	-				-1.3
3,744,066	+				-0.6
3,744,083	-				-1.5
3,744,124	+				-1.3
3,744,166	-		BT2969	0.11	-3.2
3,744,169	+		BT2969	0.11	-0.3
3,744,169	+		BT2969	0.11	-1.9
3,744,169	+		BT2969	0.11	-1.2
3,744,169	+		BT2969	0.11	-0.4
3,744,170	-		BT2969	0.11	+0.6
3,744,174	+		BT2969	0.11	-2.3
3,744,175	-		BT2969	0.11	-1.6
3,744,261	+		BT2969	0.15	-1.3
3,744,267	+		BT2969	0.16	-2.8
3,744,275	+		BT2969	0.16	-0.3
3,744,276	-		BT2969	0.16	-0.7
3,744,278	+		BT2969	0.16	-1.5
3,744,278	+		BT2969	0.16	-4.2
3,744,327	+		BT2969	0.19	-1.2
3,744,362	-		BT2969	0.20	+0.3
3,744,378	+		BT2969	0.21	-0.5
3,744,390	-		BT2969	0.22	-0.3
3,744,404	+		BT2969	0.22	-1.9
3,744,404	+		BT2969	0.22	-2.3
3,744,404	+		BT2969	0.22	-0.8
3,744,539	+		BT2969	0.29	-1.9
3,744,539	+		BT2969	0.29	-3.5
3,744,540	-		BT2969	0.29	-0.3
3,744,624	-		BT2969	0.33	-1.0
3,744,701	-		BT2969	0.36	-1.9
3,744,706	+		BT2969	0.37	-1.3
3,744,707	-		BT2969	0.37	+0.1
3,744,744	+		BT2969	0.38	-1.9
3,744,744	+		BT2969	0.38	-1.7
3,744,790	+		BT2969	0.41	-1.9