Experiment: Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0753 and BT0754 are separated by 95 nucleotides BT0754 and BT0755 are separated by 29 nucleotides
BT0753: BT0753 - putative anti-sigma factor (NCBI ptt file), at 935,148 to 936,173
BT0753
BT0754: BT0754 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 936,269 to 939,685
BT0754
BT0755: BT0755 - hypothetical protein (NCBI ptt file), at 939,715 to 941,520
BT0755
Position (kb) 936
937
938
939
940 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 935.333 kb on - strand, within BT0753 at 935.497 kb on + strand, within BT0753 at 935.502 kb on - strand, within BT0753 at 935.602 kb on + strand, within BT0753 at 935.603 kb on - strand, within BT0753 at 935.760 kb on + strand, within BT0753 at 935.771 kb on + strand, within BT0753 at 935.775 kb on + strand, within BT0753 at 935.776 kb on - strand, within BT0753 at 935.865 kb on + strand, within BT0753 at 936.081 kb on - strand at 936.083 kb on - strand at 936.144 kb on - strand at 936.153 kb on - strand at 936.209 kb on + strand at 936.279 kb on + strand at 936.554 kb on + strand at 936.583 kb on - strand at 936.583 kb on - strand at 936.707 kb on - strand, within BT0754 at 936.776 kb on - strand, within BT0754 at 937.142 kb on - strand, within BT0754 at 937.223 kb on - strand, within BT0754 at 937.388 kb on - strand, within BT0754 at 937.413 kb on - strand, within BT0754 at 937.469 kb on + strand, within BT0754 at 937.472 kb on - strand, within BT0754 at 937.585 kb on + strand, within BT0754 at 937.631 kb on - strand, within BT0754 at 937.652 kb on + strand, within BT0754 at 937.668 kb on + strand, within BT0754 at 937.669 kb on - strand, within BT0754 at 937.669 kb on - strand, within BT0754 at 937.782 kb on - strand, within BT0754 at 937.822 kb on - strand, within BT0754 at 937.949 kb on - strand, within BT0754 at 937.952 kb on + strand, within BT0754 at 937.953 kb on - strand, within BT0754 at 937.953 kb on - strand, within BT0754 at 937.967 kb on - strand, within BT0754 at 937.997 kb on + strand, within BT0754 at 937.997 kb on + strand, within BT0754 at 938.110 kb on + strand, within BT0754 at 938.289 kb on + strand, within BT0754 at 938.528 kb on - strand, within BT0754 at 938.591 kb on - strand, within BT0754 at 938.723 kb on - strand, within BT0754 at 938.723 kb on - strand, within BT0754 at 938.873 kb on + strand, within BT0754 at 938.894 kb on - strand, within BT0754 at 938.988 kb on - strand, within BT0754 at 938.988 kb on - strand, within BT0754 at 939.088 kb on + strand, within BT0754 at 939.118 kb on + strand, within BT0754 at 939.121 kb on + strand, within BT0754 at 939.133 kb on + strand, within BT0754 at 939.306 kb on - strand, within BT0754 at 939.372 kb on - strand at 939.425 kb on - strand at 939.563 kb on - strand at 939.644 kb on + strand at 939.645 kb on - strand at 939.729 kb on - strand at 939.839 kb on - strand at 939.873 kb on + strand at 939.878 kb on + strand at 939.895 kb on + strand at 940.031 kb on - strand, within BT0755 at 940.174 kb on - strand, within BT0755 at 940.541 kb on - strand, within BT0755 at 940.600 kb on - strand, within BT0755 at 940.631 kb on - strand, within BT0755 at 940.659 kb on + strand, within BT0755
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.025 mM remove 935,333 - BT0753 0.18 +0.1 935,497 + BT0753 0.34 -1.4 935,502 - BT0753 0.35 -0.3 935,602 + BT0753 0.44 -3.0 935,603 - BT0753 0.44 -0.9 935,760 + BT0753 0.60 -3.2 935,771 + BT0753 0.61 -1.7 935,775 + BT0753 0.61 +1.2 935,776 - BT0753 0.61 -2.7 935,865 + BT0753 0.70 -2.4 936,081 - -2.9 936,083 - -0.3 936,144 - +0.1 936,153 - -1.2 936,209 + -3.0 936,279 + +1.1 936,554 + -3.2 936,583 - -3.6 936,583 - -2.2 936,707 - BT0754 0.13 +0.1 936,776 - BT0754 0.15 -2.2 937,142 - BT0754 0.26 -2.9 937,223 - BT0754 0.28 -1.9 937,388 - BT0754 0.33 -0.3 937,413 - BT0754 0.33 +0.1 937,469 + BT0754 0.35 -1.6 937,472 - BT0754 0.35 -2.7 937,585 + BT0754 0.39 +0.1 937,631 - BT0754 0.40 +0.3 937,652 + BT0754 0.40 +0.1 937,668 + BT0754 0.41 +2.1 937,669 - BT0754 0.41 +0.1 937,669 - BT0754 0.41 -0.7 937,782 - BT0754 0.44 -3.2 937,822 - BT0754 0.45 +0.1 937,949 - BT0754 0.49 +1.1 937,952 + BT0754 0.49 +0.1 937,953 - BT0754 0.49 +0.6 937,953 - BT0754 0.49 -1.0 937,967 - BT0754 0.50 +2.5 937,997 + BT0754 0.51 +0.1 937,997 + BT0754 0.51 -3.6 938,110 + BT0754 0.54 -1.4 938,289 + BT0754 0.59 +0.1 938,528 - BT0754 0.66 -0.9 938,591 - BT0754 0.68 -0.3 938,723 - BT0754 0.72 -2.3 938,723 - BT0754 0.72 +0.1 938,873 + BT0754 0.76 -1.4 938,894 - BT0754 0.77 -0.9 938,988 - BT0754 0.80 -1.9 938,988 - BT0754 0.80 +0.1 939,088 + BT0754 0.82 +0.1 939,118 + BT0754 0.83 +0.1 939,121 + BT0754 0.83 -0.9 939,133 + BT0754 0.84 -2.2 939,306 - BT0754 0.89 +1.6 939,372 - -0.4 939,425 - +0.1 939,563 - -0.9 939,644 + +0.6 939,645 - -1.4 939,729 - -1.4 939,839 - -3.0 939,873 + -0.9 939,878 + -1.4 939,895 + +0.1 940,031 - BT0755 0.17 -3.1 940,174 - BT0755 0.25 +0.1 940,541 - BT0755 0.46 -0.9 940,600 - BT0755 0.49 -2.4 940,631 - BT0755 0.51 -0.9 940,659 + BT0755 0.52 -0.9
Or see this region's nucleotide sequence