Experiment: Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0096 and BT0097 are separated by 1 nucleotides BT0097 and BT0098 are separated by 4 nucleotides BT0098 and BT0099 are separated by 383 nucleotides BT0099 and BT0100 are separated by 19 nucleotides
BT0096: BT0096 - hypothetical protein (NCBI ptt file), at 88,735 to 89,415
BT0096
BT0097: BT0097 - conserved protein found in conjugate transposon (NCBI ptt file), at 89,417 to 89,854
BT0097
BT0098: BT0098 - conserved protein found in conjugate transposon (NCBI ptt file), at 89,859 to 90,620
BT0098
BT0099: BT0099 - hypothetical protein (NCBI ptt file), at 91,004 to 91,285
BT0099
BT0100: BT0100 - hypothetical protein (NCBI ptt file), at 91,305 to 91,742
BT0100
Position (kb) 89
90
91 Strain fitness (log2 ratio) -2
-1
0
1 at 89.381 kb on + strand at 89.505 kb on + strand, within BT0097 at 89.687 kb on + strand, within BT0097 at 89.854 kb on + strand at 89.868 kb on + strand at 89.916 kb on + strand at 90.298 kb on + strand, within BT0098 at 90.359 kb on + strand, within BT0098 at 90.514 kb on + strand, within BT0098 at 91.597 kb on + strand, within BT0100 at 91.598 kb on - strand, within BT0100 at 91.610 kb on + strand, within BT0100
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.025 mM remove 89,381 + -1.7 89,505 + BT0097 0.20 -0.9 89,687 + BT0097 0.62 -2.6 89,854 + -1.3 89,868 + -1.5 89,916 + -2.5 90,298 + BT0098 0.58 -0.9 90,359 + BT0098 0.66 +0.9 90,514 + BT0098 0.86 -1.5 91,597 + BT0100 0.67 +0.8 91,598 - BT0100 0.67 -2.4 91,610 + BT0100 0.70 -0.5
Or see this region's nucleotide sequence