Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around p5482_27

Experiment: Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.025 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.025 mM
21,350	+				-3.3
21,350	+				-2.0
21,350	+				-1.5
21,351	-				-1.9
21,351	-				-4.8
21,351	-				-4.9
21,351	-				-0.8
21,351	-				-2.6
21,372	+				-0.9
21,372	+				-3.3
21,386	-				-2.7
21,386	-				-4.3
21,443	+				-2.3
21,443	+				-1.1
21,443	+				-1.3
21,444	-				-1.1
21,444	-				-1.2
21,444	-				-2.3
21,445	+				-1.7
21,463	-				-0.8
21,473	+				-3.4
21,474	-				-1.5
21,490	-				-1.6
21,505	+				-2.6
21,505	+				-2.5
21,505	+				-3.2
21,506	-				-4.0
21,506	-				-1.0
21,506	-				-3.0
21,507	+				-5.0
21,507	+				-1.2
21,507	+				-1.7
21,508	-				-2.0
21,508	-				-2.4
21,508	-				-4.0
21,588	-		p5482_26	0.20	+0.6
21,607	+		p5482_26	0.25	-2.6
21,618	+		p5482_26	0.28	-4.8
21,618	+		p5482_26	0.28	-0.9
21,629	-		p5482_26	0.30	-4.1
21,640	-		p5482_26	0.33	-2.7
21,652	+		p5482_26	0.36	-4.0
21,652	+		p5482_26	0.36	-4.6
21,653	-		p5482_26	0.36	-4.7
21,653	-		p5482_26	0.36	-1.8
21,653	-		p5482_26	0.36	-3.6
21,653	-		p5482_26	0.36	-1.3
21,653	-		p5482_26	0.36	-1.0
21,655	+		p5482_26	0.37	-1.3
21,680	+		p5482_26	0.43	-2.0
21,722	+		p5482_26	0.54	-0.1
21,733	+		p5482_26	0.57	-3.0
21,734	-		p5482_26	0.57	-1.7
21,738	+		p5482_26	0.58	-2.6
21,738	+		p5482_26	0.58	-2.0
21,738	+		p5482_26	0.58	-1.1
21,739	-		p5482_26	0.58	-0.6
21,739	-		p5482_26	0.58	+0.3
21,739	-		p5482_26	0.58	-4.6
21,739	-		p5482_26	0.58	-1.2
21,739	-		p5482_26	0.58	-1.8
21,739	-		p5482_26	0.58	-3.3
21,788	+		p5482_26	0.70	-3.4
21,788	+		p5482_26	0.70	-4.1
21,796	+		p5482_26	0.72	-1.5
21,797	-		p5482_26	0.73	-1.4
21,808	+		p5482_26	0.76	-2.7
21,809	-		p5482_26	0.76	-2.0
21,826	+		p5482_26	0.80	-2.7
21,827	-		p5482_26	0.80	-1.0
21,861	+		p5482_26	0.89	-2.8
21,862	-		p5482_26	0.89	-1.1
21,866	-				-1.0
21,879	+				-0.7
21,907	+				-3.5
21,908	-				-2.1
21,908	-				-1.2
21,934	+				-1.6
21,937	-				-0.5
21,949	+				-1.3
21,957	+				-3.1
21,972	+				-4.3
21,972	+				-3.6
22,011	+				-3.3
22,017	-				-0.9
22,021	+				-0.8
22,021	+				-0.4
22,026	+				-0.7
22,026	+				-0.9
22,027	-				-1.0
22,027	-				-0.7
22,117	+				-1.4
22,117	+				-2.0
22,117	+				-3.5
22,118	-				-1.6
22,127	+				-2.4
22,127	+				-0.6
22,128	-				-1.1
22,128	-				-5.4
22,128	-				+1.1
22,132	-				-2.0
22,132	-				-1.0
22,146	+				-2.0
22,219	-				-2.8
22,219	-				-0.7
22,220	+				-2.6
22,220	+				-2.6
22,221	-				+0.2
22,234	+				-3.3
22,235	-				-1.6
22,246	-				-1.0
22,331	-				-2.6
22,342	+				-2.0
22,343	-				-5.0
22,343	-				-3.0
22,405	-				-5.1
22,474	-		p5482_27	0.12	-1.0
22,537	+		p5482_27	0.18	-4.7
22,567	+		p5482_27	0.21	-4.8
22,568	-		p5482_27	0.21	-0.1
22,568	-		p5482_27	0.21	-3.3
22,611	+		p5482_27	0.25	-3.6
22,611	+		p5482_27	0.25	-2.0
22,652	+		p5482_27	0.29	-2.6
22,652	+		p5482_27	0.29	-0.6
22,652	+		p5482_27	0.29	-4.4
22,653	-		p5482_27	0.29	-1.1
22,653	-		p5482_27	0.29	-1.6
22,653	-		p5482_27	0.29	-1.3
22,653	-		p5482_27	0.29	-0.5
22,659	-		p5482_27	0.30	-3.0
22,659	-		p5482_27	0.30	+0.6
22,698	-		p5482_27	0.33	-4.7
22,699	+		p5482_27	0.34	-2.6
22,700	-		p5482_27	0.34	-1.1
22,745	-		p5482_27	0.38	-0.6
22,762	+		p5482_27	0.39	-1.9
22,762	+		p5482_27	0.39	-3.8
22,762	+		p5482_27	0.39	-3.9
22,763	-		p5482_27	0.40	-1.1
22,769	+				-2.0
22,769	+		p5482_27	0.40	-3.8
22,769	+		p5482_27	0.40	-1.0
22,769	+		p5482_27	0.40	-1.0
22,769	+		p5482_27	0.40	-2.6
22,769	+		p5482_27	0.40	-2.7
22,770	-		p5482_27	0.40	-2.0
22,770	-		p5482_27	0.40	-0.3
22,770	-		p5482_27	0.40	-2.0
22,773	+		p5482_27	0.40	-4.4
22,774	-		p5482_27	0.41	-2.6
22,774	-		p5482_27	0.41	-1.3
22,774	-		p5482_27	0.41	-3.3
22,774	-		p5482_27	0.41	-0.5
22,774	-		p5482_27	0.41	+3.7
22,774	-		p5482_27	0.41	-5.4
22,780	+		p5482_27	0.41	-1.0
22,780	+		p5482_27	0.41	-3.6
22,780	+		p5482_27	0.41	-3.8
22,780	+		p5482_27	0.41	-3.6
22,781	-		p5482_27	0.41	-0.4
22,844	+		p5482_27	0.47	-3.6
22,844	+		p5482_27	0.47	-5.4
22,844	+		p5482_27	0.47	-4.7
22,872	-		p5482_27	0.50	-2.4
22,872	-		p5482_27	0.50	-1.4
22,872	-		p5482_27	0.50	-2.5
22,896	+		p5482_27	0.52	-3.3
22,896	+		p5482_27	0.52	-3.8
22,897	-		p5482_27	0.52	-2.4
22,897	-		p5482_27	0.52	-1.4
22,897	-		p5482_27	0.52	-2.5
22,949	+		p5482_27	0.57	-3.8
22,949	+		p5482_27	0.57	-3.4
22,949	+		p5482_27	0.57	-3.6
22,949	+		p5482_27	0.57	-4.3
22,949	+		p5482_27	0.57	-4.3
22,949	+		p5482_27	0.57	-4.3
22,949	+		p5482_27	0.57	-5.7
22,949	+		p5482_27	0.57	-4.6
22,949	+		p5482_27	0.57	-4.6
22,949	+		p5482_27	0.57	-3.8
22,950	-		p5482_27	0.57	-1.2
22,950	-		p5482_27	0.57	+1.8
22,950	-		p5482_27	0.57	-4.3
22,950	-		p5482_27	0.57	-2.6
22,950	-		p5482_27	0.57	-0.4
22,950	-		p5482_27	0.57	-3.0
22,950	-		p5482_27	0.57	-0.9
22,979	-		p5482_27	0.60	+0.6
22,983	-		p5482_27	0.60	-0.8
22,983	-		p5482_27	0.60	+0.2
22,983	-		p5482_27	0.60	-3.0
22,983	-		p5482_27	0.60	-2.2
22,994	+		p5482_27	0.61	-2.6
23,075	+		p5482_27	0.69	-4.3
23,075	+		p5482_27	0.69	-2.4
23,076	-		p5482_27	0.69	-0.8
23,086	-		p5482_27	0.70	-2.6
23,093	+		p5482_27	0.71	-2.0
23,094	-		p5482_27	0.71	-2.8
23,120	+		p5482_27	0.73	-6.0
23,120	+		p5482_27	0.73	-2.3
23,121	-		p5482_27	0.73	-4.1
23,121	-		p5482_27	0.73	-2.6
23,156	-		p5482_27	0.77	-3.6
23,165	+		p5482_27	0.77	-2.0
23,165	+		p5482_27	0.77	-2.8
23,166	-		p5482_27	0.77	-1.6
23,183	+		p5482_27	0.79	-1.0
23,243	+		p5482_27	0.85	-5.8
23,243	+		p5482_27	0.85	-4.1
23,258	+		p5482_27	0.86	-4.7
23,258	+		p5482_27	0.86	-1.0
23,263	+		p5482_27	0.87	-3.0
23,263	+		p5482_27	0.87	-1.0
23,264	-		p5482_27	0.87	-4.4
23,264	-		p5482_27	0.87	-2.6
23,264	-		p5482_27	0.87	-1.6
23,267	+		p5482_27	0.87	-4.4
23,267	+		p5482_27	0.87	-3.8
23,267	+		p5482_27	0.87	-4.0
23,267	+		p5482_27	0.87	-2.2
23,267	+		p5482_27	0.87	-4.1
23,268	-		p5482_27	0.87	-1.1
23,268	-		p5482_27	0.87	-2.4
23,268	-		p5482_27	0.87	-1.0
23,268	-		p5482_27	0.87	-1.5
23,288	+		p5482_27	0.89	-3.6
23,288	+		p5482_27	0.89	-3.8
23,288	+		p5482_27	0.89	-5.2
23,288	+		p5482_27	0.89	-4.3
23,288	+		p5482_27	0.89	-4.6
23,289	-		p5482_27	0.89	-1.4
23,289	-		p5482_27	0.89	-1.1
23,289	-		p5482_27	0.89	-3.3
23,289	-		p5482_27	0.89	-2.0
23,352	+				-2.0
23,405	+				-4.3
23,405	+				-4.5
23,412	-				+0.0
23,419	-				+1.9
23,433	-				-1.7
23,466	+		p5482_28	0.12	-3.0
23,474	+		p5482_28	0.12	-0.2
23,475	-		p5482_28	0.13	-3.4
23,479	+		p5482_28	0.13	-5.4
23,480	-		p5482_28	0.13	-1.3
23,480	-		p5482_28	0.13	-1.5
23,511	-		p5482_28	0.16	-1.5
23,568	-		p5482_28	0.22	-3.3
23,568	-		p5482_28	0.22	-1.3
23,568	-		p5482_28	0.22	-1.0
23,568	-		p5482_28	0.22	-1.8
23,573	-		p5482_28	0.23	-0.8
23,603	+		p5482_28	0.26	-3.6
23,604	-		p5482_28	0.26	-1.3
23,604	-		p5482_28	0.26	-1.6
23,678	-		p5482_28	0.34	-3.0
23,716	+		p5482_28	0.37	-3.4
23,717	-		p5482_28	0.38	-1.1
23,717	-		p5482_28	0.38	-1.1
23,806	-		p5482_28	0.47	+0.8
23,806	-		p5482_28	0.47	+0.0
23,806	-		p5482_28	0.47	-2.6
23,806	-		p5482_28	0.47	-3.1
23,806	-		p5482_28	0.47	-1.4
23,806	-		p5482_28	0.47	-2.6
23,806	-		p5482_28	0.47	-2.0
23,807	+		p5482_28	0.47	-3.8
23,808	-		p5482_28	0.47	-5.6
23,808	-		p5482_28	0.47	-1.3
23,852	+		p5482_28	0.51	-3.0
23,852	+		p5482_28	0.51	-2.6
23,853	-		p5482_28	0.52	+4.3
23,856	-		p5482_28	0.52	-1.9
23,856	-		p5482_28	0.52	-1.0
23,862	-		p5482_28	0.53	-1.1
23,862	-		p5482_28	0.53	-0.4
23,879	+		p5482_28	0.54	-3.1
23,888	-		p5482_28	0.55	-1.0
23,888	-		p5482_28	0.55	-1.3
23,888	-		p5482_28	0.55	-2.0
23,894	-		p5482_28	0.56	-4.1
23,894	-		p5482_28	0.56	-4.1
23,894	-		p5482_28	0.56	-0.6
23,894	-		p5482_28	0.56	+0.6
23,894	-		p5482_28	0.56	-2.7
23,894	-		p5482_28	0.56	-1.7
23,971	-		p5482_28	0.64	-4.1
23,971	-		p5482_28	0.64	-1.3
24,048	+		p5482_28	0.72	-4.1
24,048	+		p5482_28	0.72	-4.6
24,049	-		p5482_28	0.72	-1.2
24,049	-		p5482_28	0.72	-2.7
24,051	-		p5482_28	0.72	-0.6
24,051	-		p5482_28	0.72	-0.2
24,061	+		p5482_28	0.73	-4.1
24,062	-		p5482_28	0.73	-2.1
24,063	+		p5482_28	0.73	-3.3
24,064	-		p5482_28	0.73	-1.2
24,064	-		p5482_28	0.73	-2.6
24,113	-		p5482_28	0.78	-0.9
24,113	-		p5482_28	0.78	-1.0
24,139	+		p5482_28	0.81	-6.0
24,143	+		p5482_28	0.82	-2.6
24,143	+		p5482_28	0.82	-2.0
24,196	-		p5482_28	0.87	-0.9
24,229	+				-1.0
24,229	+				-2.0
24,230	-				+5.4
24,230	-				-3.6
24,236	+				-4.1
24,311	+				-7.0
24,312	-				-5.6
24,312	-				-1.1
24,312	-				-2.8
24,312	-				-2.6
24,312	-				-1.5
24,376	+				-3.1
24,381	+				-2.7
24,381	+				-3.8
24,382	-				-1.8
24,382	-				-1.8