Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0520

Experiment: Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0519 and DVU0520 are separated by 11 nucleotidesDVU0520 and csrA are separated by 13 nucleotidescsrA and yviF overlap by 22 nucleotides DVU0519: DVU0519 - flagellar hook-associated protein FlgK, putative (TIGR), at 592,514 to 594,610 DVU0519 DVU0520: DVU0520 - flagellar hook-associated protein FlgL, putative (TIGR), at 594,622 to 596,193 DVU0520 DVU0521: csrA - carbon storage regulator (TIGR), at 596,207 to 596,443 csrA DVU0522: yviF - conserved hypothetical protein (TIGR), at 596,422 to 596,943 yviF Position (kb) 594 595 596 597Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 593.640 kb on - strand, within DVU0519at 593.640 kb on - strand, within DVU0519at 593.640 kb on - strand, within DVU0519at 593.640 kb on - strand, within DVU0519at 593.640 kb on - strand, within DVU0519at 593.689 kb on + strand, within DVU0519at 593.735 kb on + strand, within DVU0519at 593.736 kb on + strand, within DVU0519at 593.808 kb on + strand, within DVU0519at 593.818 kb on + strand, within DVU0519at 593.826 kb on - strand, within DVU0519at 593.997 kb on + strand, within DVU0519at 594.132 kb on + strand, within DVU0519at 594.138 kb on - strand, within DVU0519at 594.163 kb on - strand, within DVU0519at 594.192 kb on + strand, within DVU0519at 594.200 kb on - strand, within DVU0519at 594.248 kb on - strand, within DVU0519at 594.288 kb on + strand, within DVU0519at 594.305 kb on + strand, within DVU0519at 594.381 kb on + strand, within DVU0519at 594.390 kb on + strand, within DVU0519at 594.467 kb on - strandat 594.557 kb on + strandat 594.597 kb on + strandat 594.797 kb on - strand, within DVU0520at 594.811 kb on - strand, within DVU0520at 594.824 kb on - strand, within DVU0520at 594.826 kb on + strand, within DVU0520at 594.826 kb on + strand, within DVU0520at 594.834 kb on - strand, within DVU0520at 594.840 kb on - strand, within DVU0520at 594.865 kb on + strand, within DVU0520at 594.865 kb on + strand, within DVU0520at 594.869 kb on + strand, within DVU0520at 594.875 kb on - strand, within DVU0520at 594.888 kb on + strand, within DVU0520at 594.888 kb on + strand, within DVU0520at 594.890 kb on + strand, within DVU0520at 594.896 kb on - strand, within DVU0520at 594.896 kb on - strand, within DVU0520at 594.929 kb on + strand, within DVU0520at 594.979 kb on - strand, within DVU0520at 595.029 kb on - strand, within DVU0520at 595.093 kb on - strand, within DVU0520at 595.289 kb on + strand, within DVU0520at 595.289 kb on + strand, within DVU0520at 595.292 kb on + strand, within DVU0520at 595.301 kb on + strand, within DVU0520at 595.303 kb on - strand, within DVU0520at 595.337 kb on - strand, within DVU0520at 595.357 kb on - strand, within DVU0520at 595.389 kb on + strand, within DVU0520at 595.396 kb on + strand, within DVU0520at 595.466 kb on + strand, within DVU0520at 595.476 kb on - strand, within DVU0520at 595.510 kb on - strand, within DVU0520at 595.564 kb on + strand, within DVU0520at 595.622 kb on + strand, within DVU0520at 595.699 kb on + strand, within DVU0520at 595.739 kb on + strand, within DVU0520at 595.796 kb on - strand, within DVU0520at 595.802 kb on - strand, within DVU0520at 595.826 kb on - strand, within DVU0520at 595.864 kb on + strand, within DVU0520at 595.920 kb on + strand, within DVU0520at 595.935 kb on - strand, within DVU0520at 595.935 kb on - strand, within DVU0520at 596.027 kb on - strand, within DVU0520at 596.029 kb on - strand, within DVU0520at 596.106 kb on - strandat 596.128 kb on + strandat 596.187 kb on + strandat 596.228 kb on - strandat 596.285 kb on - strand, within csrAat 596.353 kb on - strand, within csrAat 596.394 kb on + strand, within csrAat 596.397 kb on - strand, within csrAat 596.469 kb on + strandat 596.486 kb on + strand, within yviFat 596.507 kb on + strand, within yviFat 596.610 kb on + strand, within yviFat 596.686 kb on + strand, within yviFat 596.694 kb on + strand, within yviFat 596.756 kb on + strand, within yviFat 596.771 kb on + strand, within yviFat 596.938 kb on + strandat 596.938 kb on + strandat 597.143 kb on - strandat 597.164 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%
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593,640 - DVU0519 0.54 +0.9
593,640 - DVU0519 0.54 +1.3
593,640 - DVU0519 0.54 +1.3
593,640 - DVU0519 0.54 +1.3
593,640 - DVU0519 0.54 +1.3
593,689 + DVU0519 0.56 +1.3
593,735 + DVU0519 0.58 +1.0
593,736 + DVU0519 0.58 +0.4
593,808 + DVU0519 0.62 +1.2
593,818 + DVU0519 0.62 +1.3
593,826 - DVU0519 0.63 +1.2
593,997 + DVU0519 0.71 +0.7
594,132 + DVU0519 0.77 +1.7
594,138 - DVU0519 0.77 +1.1
594,163 - DVU0519 0.79 +1.2
594,192 + DVU0519 0.80 +0.6
594,200 - DVU0519 0.80 +0.9
594,248 - DVU0519 0.83 +1.2
594,288 + DVU0519 0.85 +1.3
594,305 + DVU0519 0.85 -0.0
594,381 + DVU0519 0.89 +0.5
594,390 + DVU0519 0.89 +1.2
594,467 - +1.7
594,557 + +1.5
594,597 + +1.2
594,797 - DVU0520 0.11 +1.0
594,811 - DVU0520 0.12 +0.9
594,824 - DVU0520 0.13 +0.7
594,826 + DVU0520 0.13 +1.4
594,826 + DVU0520 0.13 -0.2
594,834 - DVU0520 0.13 +1.3
594,840 - DVU0520 0.14 +0.3
594,865 + DVU0520 0.15 +0.6
594,865 + DVU0520 0.15 +1.1
594,869 + DVU0520 0.16 +1.8
594,875 - DVU0520 0.16 +1.3
594,888 + DVU0520 0.17 +1.0
594,888 + DVU0520 0.17 -0.7
594,890 + DVU0520 0.17 +1.0
594,896 - DVU0520 0.17 +1.0
594,896 - DVU0520 0.17 +0.9
594,929 + DVU0520 0.20 +1.2
594,979 - DVU0520 0.23 +1.0
595,029 - DVU0520 0.26 +1.1
595,093 - DVU0520 0.30 +0.8
595,289 + DVU0520 0.42 +1.2
595,289 + DVU0520 0.42 +1.2
595,292 + DVU0520 0.43 +3.8
595,301 + DVU0520 0.43 -0.3
595,303 - DVU0520 0.43 -0.6
595,337 - DVU0520 0.45 +1.1
595,357 - DVU0520 0.47 +1.0
595,389 + DVU0520 0.49 +0.2
595,396 + DVU0520 0.49 +1.1
595,466 + DVU0520 0.54 +0.7
595,476 - DVU0520 0.54 +3.1
595,510 - DVU0520 0.56 +1.0
595,564 + DVU0520 0.60 +1.1
595,622 + DVU0520 0.64 +1.1
595,699 + DVU0520 0.69 +0.4
595,739 + DVU0520 0.71 +0.3
595,796 - DVU0520 0.75 +0.8
595,802 - DVU0520 0.75 -1.0
595,826 - DVU0520 0.77 -2.2
595,864 + DVU0520 0.79 +0.8
595,920 + DVU0520 0.83 +1.6
595,935 - DVU0520 0.84 +0.5
595,935 - DVU0520 0.84 +0.8
596,027 - DVU0520 0.89 +1.7
596,029 - DVU0520 0.90 +1.1
596,106 - +1.0
596,128 + +1.0
596,187 + -0.9
596,228 - +0.5
596,285 - csrA DVU0521 0.33 +0.1
596,353 - csrA DVU0521 0.62 -0.7
596,394 + csrA DVU0521 0.79 +0.1
596,397 - csrA DVU0521 0.80 +0.7
596,469 + -0.1
596,486 + yviF DVU0522 0.12 -0.0
596,507 + yviF DVU0522 0.16 +1.1
596,610 + yviF DVU0522 0.36 +0.9
596,686 + yviF DVU0522 0.51 +0.6
596,694 + yviF DVU0522 0.52 +1.2
596,756 + yviF DVU0522 0.64 +1.1
596,771 + yviF DVU0522 0.67 +1.0
596,938 + -1.5
596,938 + +0.0
597,143 - -0.5
597,164 - +0.1

Or see this region's nucleotide sequence