Experiment: Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0349 and spsF are separated by 36 nucleotides spsF and DVU0351 overlap by 4 nucleotides
DVU0349: DVU0349 - NeuB family protein (TIGR), at 396,098 to 397,156
DVU0349
DVU0350: spsF - spore coat polysaccharide biosynthesis protein spsF (TIGR), at 397,193 to 397,876
spsF
DVU0351: DVU0351 - cytidine 5monophosphate N-acetylneuraminic acid synthetase, putative/polysaccharide biosynthesis protein (TIGR), at 397,873 to 399,507
DVU0351
Position (kb) 397
398 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 396.287 kb on - strand, within DVU0349 at 396.303 kb on - strand, within DVU0349 at 396.313 kb on + strand, within DVU0349 at 396.350 kb on + strand, within DVU0349 at 396.378 kb on - strand, within DVU0349 at 396.380 kb on + strand, within DVU0349 at 396.389 kb on - strand, within DVU0349 at 396.393 kb on + strand, within DVU0349 at 396.428 kb on - strand, within DVU0349 at 396.508 kb on + strand, within DVU0349 at 396.559 kb on - strand, within DVU0349 at 396.599 kb on - strand, within DVU0349 at 396.624 kb on + strand, within DVU0349 at 396.656 kb on - strand, within DVU0349 at 396.673 kb on + strand, within DVU0349 at 396.762 kb on + strand, within DVU0349 at 396.815 kb on - strand, within DVU0349 at 396.827 kb on - strand, within DVU0349 at 396.846 kb on + strand, within DVU0349 at 396.959 kb on + strand, within DVU0349 at 396.961 kb on + strand, within DVU0349 at 396.998 kb on - strand, within DVU0349 at 397.070 kb on + strand at 397.092 kb on + strand at 397.092 kb on + strand at 397.174 kb on - strand at 397.190 kb on + strand at 397.250 kb on + strand at 397.259 kb on + strand at 397.289 kb on - strand, within spsF at 397.317 kb on + strand, within spsF at 397.326 kb on - strand, within spsF at 397.341 kb on - strand, within spsF at 397.428 kb on + strand, within spsF at 397.428 kb on + strand, within spsF at 397.481 kb on - strand, within spsF at 397.481 kb on - strand, within spsF at 397.517 kb on + strand, within spsF at 397.529 kb on + strand, within spsF at 397.568 kb on - strand, within spsF at 397.568 kb on - strand, within spsF at 397.569 kb on + strand, within spsF at 397.581 kb on + strand, within spsF at 397.598 kb on - strand, within spsF at 397.608 kb on - strand, within spsF at 397.659 kb on + strand, within spsF at 397.671 kb on + strand, within spsF at 397.677 kb on - strand, within spsF at 397.720 kb on + strand, within spsF at 397.813 kb on + strand at 397.847 kb on - strand at 397.869 kb on - strand at 397.898 kb on + strand at 397.913 kb on + strand at 397.921 kb on + strand at 398.020 kb on + strand at 398.024 kb on + strand at 398.031 kb on - strand at 398.151 kb on + strand, within DVU0351 at 398.151 kb on + strand, within DVU0351 at 398.152 kb on + strand, within DVU0351 at 398.195 kb on - strand, within DVU0351 at 398.257 kb on - strand, within DVU0351 at 398.287 kb on - strand, within DVU0351 at 398.295 kb on + strand, within DVU0351 at 398.516 kb on + strand, within DVU0351 at 398.630 kb on + strand, within DVU0351 at 398.638 kb on - strand, within DVU0351 at 398.671 kb on + strand, within DVU0351 at 398.824 kb on - strand, within DVU0351 at 398.824 kb on - strand, within DVU0351 at 398.829 kb on - strand, within DVU0351
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2% remove 396,287 - DVU0349 0.18 -2.5 396,303 - DVU0349 0.19 -2.4 396,313 + DVU0349 0.20 -2.8 396,350 + DVU0349 0.24 -1.8 396,378 - DVU0349 0.26 -3.1 396,380 + DVU0349 0.27 -1.0 396,389 - DVU0349 0.27 +0.1 396,393 + DVU0349 0.28 -1.8 396,428 - DVU0349 0.31 -1.4 396,508 + DVU0349 0.39 -0.1 396,559 - DVU0349 0.44 -1.5 396,599 - DVU0349 0.47 -1.8 396,624 + DVU0349 0.50 -0.9 396,656 - DVU0349 0.53 -1.0 396,673 + DVU0349 0.54 -1.0 396,762 + DVU0349 0.63 -2.5 396,815 - DVU0349 0.68 -1.0 396,827 - DVU0349 0.69 -1.2 396,846 + DVU0349 0.71 -1.2 396,959 + DVU0349 0.81 -1.8 396,961 + DVU0349 0.81 -0.9 396,998 - DVU0349 0.85 -0.1 397,070 + -1.4 397,092 + -0.9 397,092 + -1.2 397,174 - -0.2 397,190 + +1.3 397,250 + -0.6 397,259 + -0.1 397,289 - spsF DVU0350 0.14 -1.0 397,317 + spsF DVU0350 0.18 -1.2 397,326 - spsF DVU0350 0.19 -0.0 397,341 - spsF DVU0350 0.22 -0.0 397,428 + spsF DVU0350 0.34 -0.1 397,428 + spsF DVU0350 0.34 -2.2 397,481 - spsF DVU0350 0.42 +0.8 397,481 - spsF DVU0350 0.42 -0.1 397,517 + spsF DVU0350 0.47 +0.1 397,529 + spsF DVU0350 0.49 -0.1 397,568 - spsF DVU0350 0.55 +0.1 397,568 - spsF DVU0350 0.55 -0.4 397,569 + spsF DVU0350 0.55 -0.3 397,581 + spsF DVU0350 0.57 -1.8 397,598 - spsF DVU0350 0.59 -0.3 397,608 - spsF DVU0350 0.61 -0.2 397,659 + spsF DVU0350 0.68 -0.2 397,671 + spsF DVU0350 0.70 -0.5 397,677 - spsF DVU0350 0.71 -0.5 397,720 + spsF DVU0350 0.77 -1.0 397,813 + -0.3 397,847 - -0.4 397,869 - -1.6 397,898 + -0.6 397,913 + -0.2 397,921 + -0.8 398,020 + -0.6 398,024 + -1.0 398,031 - -0.3 398,151 + DVU0351 0.17 -0.3 398,151 + DVU0351 0.17 -0.4 398,152 + DVU0351 0.17 -0.7 398,195 - DVU0351 0.20 -2.2 398,257 - DVU0351 0.23 -0.5 398,287 - DVU0351 0.25 -2.6 398,295 + DVU0351 0.26 -0.8 398,516 + DVU0351 0.39 -0.0 398,630 + DVU0351 0.46 -1.5 398,638 - DVU0351 0.47 -1.0 398,671 + DVU0351 0.49 -0.5 398,824 - DVU0351 0.58 -0.8 398,824 - DVU0351 0.58 -0.6 398,829 - DVU0351 0.58 -0.5
Or see this region's nucleotide sequence