Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3372

Experiment: Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pyruvate (fermenting) with Na2S as sulfur source with Casaminos 0.2%
3,543,850	-	metE	DVU3371	0.74	-0.1
3,543,885	-	metE	DVU3371	0.76	+0.1
3,543,895	-	metE	DVU3371	0.76	+0.6
3,543,899	-	metE	DVU3371	0.76	+1.2
3,543,908	+	metE	DVU3371	0.77	-1.0
3,543,916	-	metE	DVU3371	0.77	+1.6
3,543,943	-	metE	DVU3371	0.78	-0.5
3,543,967	+	metE	DVU3371	0.79	-0.1
3,544,044	+	metE	DVU3371	0.83	-0.0
3,544,119	+	metE	DVU3371	0.86	-0.4
3,544,172	-	metE	DVU3371	0.88	+0.0
3,544,172	-	metE	DVU3371	0.88	+0.2
3,544,172	-	metE	DVU3371	0.88	-1.3
3,544,177	-	metE	DVU3371	0.88	-0.1
3,544,195	+	metE	DVU3371	0.89	+0.3
3,544,204	+	metE	DVU3371	0.89	+0.3
3,544,232	+				+0.4
3,544,244	+				-0.6
3,544,315	+				-1.5
3,544,316	-				+1.0
3,544,318	-				+0.2
3,544,327	+				-0.1
3,544,327	+				+0.4
3,544,335	-				-0.4
3,544,335	-				-2.3
3,544,396	+				-0.3
3,544,471	+				+1.4
3,544,471	+				+0.3
3,544,471	+				-0.2
3,544,471	+				+0.8
3,544,473	+				-0.4
3,544,504	+				-0.5
3,544,519	+				-0.2
3,544,527	-				-1.3
3,544,557	+				-0.2
3,544,564	+				-0.2
3,544,565	-				+0.1
3,544,565	-				-0.2
3,544,565	-				-0.5
3,544,575	+				-0.2
3,544,708	+				-0.1
3,544,738	+				-0.3
3,544,743	+				+0.2
3,544,837	+		DVU3372	0.44	-0.1
3,544,870	-		DVU3372	0.69	-0.4
3,544,871	+		DVU3372	0.70	+0.0
3,544,872	+		DVU3372	0.70	-0.4
3,544,904	+				+0.2
3,544,956	-				-0.2
3,544,994	+				-0.4
3,545,026	-				+0.1
3,545,125	+				+0.6
3,545,133	-				+0.3
3,545,133	-				+1.2
3,545,168	+	ilvD	DVU3373	0.11	-0.4
3,545,176	-	ilvD	DVU3373	0.11	+0.0
3,545,212	+	ilvD	DVU3373	0.13	-0.1
3,545,238	-	ilvD	DVU3373	0.15	+0.2
3,545,254	-	ilvD	DVU3373	0.16	+0.1
3,545,275	+	ilvD	DVU3373	0.17	+0.7
3,545,296	-	ilvD	DVU3373	0.18	-0.4
3,545,343	+	ilvD	DVU3373	0.21	+1.2
3,545,371	-	ilvD	DVU3373	0.23	+1.5
3,545,494	+	ilvD	DVU3373	0.30	+0.7
3,545,557	-	ilvD	DVU3373	0.34	+0.7
3,545,662	+	ilvD	DVU3373	0.40	+0.9
3,545,662	+	ilvD	DVU3373	0.40	+0.6
3,545,662	+	ilvD	DVU3373	0.40	-0.4
3,545,662	+	ilvD	DVU3373	0.40	-0.3
3,545,662	+	ilvD	DVU3373	0.40	+0.2
3,545,667	+	ilvD	DVU3373	0.41	+1.4
3,545,670	-	ilvD	DVU3373	0.41	+0.3
3,545,670	-	ilvD	DVU3373	0.41	+1.0
3,545,670	-	ilvD	DVU3373	0.41	+0.4
3,545,670	-	ilvD	DVU3373	0.41	-0.6
3,545,682	+	ilvD	DVU3373	0.42	+0.0
3,545,741	+	ilvD	DVU3373	0.45	-0.2
3,545,766	-	ilvD	DVU3373	0.47	+0.1
3,545,837	+	ilvD	DVU3373	0.51	-0.3
3,545,837	+	ilvD	DVU3373	0.51	-0.3
3,545,845	-	ilvD	DVU3373	0.51	-0.1
3,545,869	-	ilvD	DVU3373	0.53	-0.1