Strain Fitness in Sinorhizobium meliloti 1021 around SMc03135

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03138 and SMc03137 are separated by 21 nucleotidesSMc03137 and SMc03136 overlap by 4 nucleotidesSMc03136 and SMc03135 are separated by 148 nucleotidesSMc03135 and SMc03134 are separated by 14 nucleotidesSMc03134 and SMc03133 overlap by 11 nucleotides SMc03138: SMc03138 - sugar kinase, at 3,192,589 to 3,193,401 SMc03138 SMc03137: SMc03137 - hypothetical protein, at 3,193,423 to 3,193,884 SMc03137 SMc03136: SMc03136 - hypothetical protein, at 3,193,881 to 3,194,126 SMc03136 SMc03135: SMc03135 - amino-acid transport system ATP-binding ABC transporter protein, at 3,194,275 to 3,195,030 SMc03135 SMc03134: SMc03134 - hypothetical protein, at 3,195,045 to 3,195,926 SMc03134 SMc03133: SMc03133 - amino-acid transport system permease ABC transporter protein, at 3,195,916 to 3,196,887 SMc03133 Position (kb) 3194 3195 3196Strain fitness (log2 ratio) -1 0 1 2at 3193.501 kb on + strand, within SMc03137at 3193.502 kb on - strand, within SMc03137at 3193.684 kb on + strand, within SMc03137at 3193.685 kb on - strand, within SMc03137at 3193.685 kb on - strand, within SMc03137at 3193.897 kb on + strandat 3193.897 kb on + strandat 3194.047 kb on + strand, within SMc03136at 3194.133 kb on - strandat 3194.191 kb on + strandat 3194.192 kb on - strandat 3194.200 kb on + strandat 3194.269 kb on + strandat 3194.270 kb on - strandat 3194.270 kb on - strandat 3194.642 kb on + strand, within SMc03135at 3194.642 kb on + strand, within SMc03135at 3194.961 kb on - strandat 3194.961 kb on - strandat 3195.046 kb on + strandat 3195.136 kb on + strand, within SMc03134at 3195.598 kb on + strand, within SMc03134at 3195.734 kb on - strand, within SMc03134at 3195.963 kb on + strandat 3195.963 kb on + strandat 3195.964 kb on - strandat 3195.964 kb on - strandat 3195.965 kb on + strandat 3195.965 kb on + strandat 3195.992 kb on + strandat 3195.992 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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3,193,501 + SMc03137 0.17 +0.1
3,193,502 - SMc03137 0.17 -0.2
3,193,684 + SMc03137 0.56 +0.7
3,193,685 - SMc03137 0.57 -0.3
3,193,685 - SMc03137 0.57 -0.1
3,193,897 + +0.1
3,193,897 + -0.0
3,194,047 + SMc03136 0.67 +2.0
3,194,133 - -0.2
3,194,191 + -0.3
3,194,192 - -0.1
3,194,200 + -0.4
3,194,269 + -0.4
3,194,270 - -0.9
3,194,270 - -0.1
3,194,642 + SMc03135 0.49 -0.9
3,194,642 + SMc03135 0.49 -1.1
3,194,961 - +0.0
3,194,961 - -1.1
3,195,046 + -0.2
3,195,136 + SMc03134 0.10 -0.4
3,195,598 + SMc03134 0.63 -0.6
3,195,734 - SMc03134 0.78 -0.5
3,195,963 + +0.4
3,195,963 + +0.9
3,195,964 - -0.1
3,195,964 - -0.1
3,195,965 + +0.1
3,195,965 + +1.1
3,195,992 + -0.4
3,195,992 + -0.8

Or see this region's nucleotide sequence