Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03138 and SMc03137 are separated by 21 nucleotides SMc03137 and SMc03136 overlap by 4 nucleotides SMc03136 and SMc03135 are separated by 148 nucleotides SMc03135 and SMc03134 are separated by 14 nucleotides SMc03134 and SMc03133 overlap by 11 nucleotides
SMc03138: SMc03138 - sugar kinase, at 3,192,589 to 3,193,401
SMc03138
SMc03137: SMc03137 - hypothetical protein, at 3,193,423 to 3,193,884
SMc03137
SMc03136: SMc03136 - hypothetical protein, at 3,193,881 to 3,194,126
SMc03136
SMc03135: SMc03135 - amino-acid transport system ATP-binding ABC transporter protein, at 3,194,275 to 3,195,030
SMc03135
SMc03134: SMc03134 - hypothetical protein, at 3,195,045 to 3,195,926
SMc03134
SMc03133: SMc03133 - amino-acid transport system permease ABC transporter protein, at 3,195,916 to 3,196,887
SMc03133
Position (kb)
3194
3195
3196 Strain fitness (log2 ratio)
-1
0
1
2 at 3193.501 kb on + strand, within SMc03137 at 3193.502 kb on - strand, within SMc03137 at 3193.684 kb on + strand, within SMc03137 at 3193.685 kb on - strand, within SMc03137 at 3193.685 kb on - strand, within SMc03137 at 3193.897 kb on + strand at 3193.897 kb on + strand at 3194.047 kb on + strand, within SMc03136 at 3194.133 kb on - strand at 3194.191 kb on + strand at 3194.192 kb on - strand at 3194.200 kb on + strand at 3194.269 kb on + strand at 3194.270 kb on - strand at 3194.270 kb on - strand at 3194.642 kb on + strand, within SMc03135 at 3194.642 kb on + strand, within SMc03135 at 3194.961 kb on - strand at 3194.961 kb on - strand at 3195.046 kb on + strand at 3195.136 kb on + strand, within SMc03134 at 3195.598 kb on + strand, within SMc03134 at 3195.734 kb on - strand, within SMc03134 at 3195.963 kb on + strand at 3195.963 kb on + strand at 3195.964 kb on - strand at 3195.964 kb on - strand at 3195.965 kb on + strand at 3195.965 kb on + strand at 3195.992 kb on + strand at 3195.992 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 3,193,501 + SMc03137 0.17 +0.1 3,193,502 - SMc03137 0.17 -0.2 3,193,684 + SMc03137 0.56 +0.7 3,193,685 - SMc03137 0.57 -0.3 3,193,685 - SMc03137 0.57 -0.1 3,193,897 + +0.1 3,193,897 + -0.0 3,194,047 + SMc03136 0.67 +2.0 3,194,133 - -0.2 3,194,191 + -0.3 3,194,192 - -0.1 3,194,200 + -0.4 3,194,269 + -0.4 3,194,270 - -0.9 3,194,270 - -0.1 3,194,642 + SMc03135 0.49 -0.9 3,194,642 + SMc03135 0.49 -1.1 3,194,961 - +0.0 3,194,961 - -1.1 3,195,046 + -0.2 3,195,136 + SMc03134 0.10 -0.4 3,195,598 + SMc03134 0.63 -0.6 3,195,734 - SMc03134 0.78 -0.5 3,195,963 + +0.4 3,195,963 + +0.9 3,195,964 - -0.1 3,195,964 - -0.1 3,195,965 + +0.1 3,195,965 + +1.1 3,195,992 + -0.4 3,195,992 + -0.8
Or see this region's nucleotide sequence