Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02574 and SMc02575 are separated by 320 nucleotides SMc02575 and SMc02576 overlap by 11 nucleotides SMc02576 and SMc02577 overlap by 4 nucleotides
SMc02574: SMc02574 - imidazoleglycerol-phosphate dehydratase, at 60,608 to 61,216
SMc02574
SMc02575: SMc02575 - ATP-dependent protease peptidase subunit, at 61,537 to 62,094
SMc02575
SMc02576: SMc02576 - acetyltransferase, at 62,084 to 62,605
SMc02576
SMc02577: SMc02577 - ATP-dependent protease ATP-binding subunit HslU, at 62,602 to 63,909
SMc02577
Position (kb) 62
63 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 61.084 kb on + strand, within SMc02574 at 61.084 kb on + strand, within SMc02574 at 61.085 kb on - strand, within SMc02574 at 61.085 kb on - strand, within SMc02574 at 61.085 kb on - strand, within SMc02574 at 61.085 kb on - strand, within SMc02574 at 61.264 kb on - strand at 61.348 kb on + strand at 61.348 kb on + strand at 61.349 kb on - strand at 61.368 kb on - strand at 61.466 kb on + strand at 61.467 kb on - strand at 61.467 kb on - strand at 61.470 kb on + strand at 61.471 kb on - strand at 61.471 kb on - strand at 61.585 kb on - strand at 61.585 kb on - strand at 61.585 kb on - strand at 61.650 kb on + strand, within SMc02575 at 61.650 kb on + strand, within SMc02575 at 61.800 kb on - strand, within SMc02575 at 61.821 kb on + strand, within SMc02575 at 61.821 kb on + strand, within SMc02575 at 61.831 kb on + strand, within SMc02575 at 61.831 kb on + strand, within SMc02575 at 61.832 kb on - strand, within SMc02575 at 61.832 kb on - strand, within SMc02575 at 61.954 kb on + strand, within SMc02575 at 61.955 kb on - strand, within SMc02575 at 62.050 kb on + strand at 62.050 kb on + strand at 62.051 kb on - strand at 62.282 kb on + strand, within SMc02576 at 62.282 kb on + strand, within SMc02576 at 62.647 kb on + strand at 62.647 kb on + strand at 62.648 kb on - strand at 62.661 kb on + strand at 62.757 kb on + strand, within SMc02577 at 62.757 kb on + strand, within SMc02577 at 62.757 kb on + strand, within SMc02577 at 62.757 kb on + strand, within SMc02577 at 62.758 kb on - strand, within SMc02577 at 62.758 kb on - strand, within SMc02577 at 62.872 kb on + strand, within SMc02577 at 62.873 kb on - strand, within SMc02577 at 63.241 kb on + strand, within SMc02577 at 63.241 kb on + strand, within SMc02577 at 63.242 kb on - strand, within SMc02577 at 63.242 kb on - strand, within SMc02577 at 63.242 kb on - strand, within SMc02577
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 61,084 + SMc02574 0.78 -5.2 61,084 + SMc02574 0.78 -3.0 61,085 - SMc02574 0.78 -2.7 61,085 - SMc02574 0.78 -1.8 61,085 - SMc02574 0.78 -4.5 61,085 - SMc02574 0.78 -2.3 61,264 - -2.0 61,348 + -1.8 61,348 + -2.3 61,349 - +0.1 61,368 - +0.5 61,466 + +0.2 61,467 - +0.3 61,467 - -0.3 61,470 + +0.7 61,471 - +0.4 61,471 - -0.5 61,585 - +0.2 61,585 - -1.0 61,585 - -1.1 61,650 + SMc02575 0.20 -0.4 61,650 + SMc02575 0.20 +0.2 61,800 - SMc02575 0.47 -1.6 61,821 + SMc02575 0.51 -0.0 61,821 + SMc02575 0.51 -0.1 61,831 + SMc02575 0.53 -0.5 61,831 + SMc02575 0.53 -0.4 61,832 - SMc02575 0.53 -0.4 61,832 - SMc02575 0.53 -0.5 61,954 + SMc02575 0.75 -0.8 61,955 - SMc02575 0.75 -0.3 62,050 + -0.7 62,050 + +1.2 62,051 - -0.6 62,282 + SMc02576 0.38 -0.2 62,282 + SMc02576 0.38 -0.9 62,647 + -0.4 62,647 + -0.0 62,648 - -2.2 62,661 + +0.2 62,757 + SMc02577 0.12 +0.2 62,757 + SMc02577 0.12 -0.4 62,757 + SMc02577 0.12 +0.8 62,757 + SMc02577 0.12 -0.2 62,758 - SMc02577 0.12 -0.6 62,758 - SMc02577 0.12 +0.8 62,872 + SMc02577 0.21 +0.1 62,873 - SMc02577 0.21 -1.8 63,241 + SMc02577 0.49 +0.2 63,241 + SMc02577 0.49 -0.0 63,242 - SMc02577 0.49 -1.9 63,242 - SMc02577 0.49 -0.4 63,242 - SMc02577 0.49 -0.3
Or see this region's nucleotide sequence