Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02572 and SMc02573 overlap by 1 nucleotides SMc02573 and SMc02574 are separated by 26 nucleotides SMc02574 and SMc02575 are separated by 320 nucleotides SMc02575 and SMc02576 overlap by 11 nucleotides
SMc02572: SMc02572 - imidazole glycerol phosphate synthase subunit HisH, at 59,458 to 60,108
SMc02572
SMc02573: SMc02573 - hypothetical protein, at 60,108 to 60,581
SMc02573
SMc02574: SMc02574 - imidazoleglycerol-phosphate dehydratase, at 60,608 to 61,216
SMc02574
SMc02575: SMc02575 - ATP-dependent protease peptidase subunit, at 61,537 to 62,094
SMc02575
SMc02576: SMc02576 - acetyltransferase, at 62,084 to 62,605
SMc02576
Position (kb) 60
61
62 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 59.627 kb on + strand, within SMc02572 at 59.627 kb on + strand, within SMc02572 at 59.628 kb on - strand, within SMc02572 at 60.232 kb on + strand, within SMc02573 at 60.233 kb on - strand, within SMc02573 at 60.572 kb on - strand at 60.572 kb on - strand at 60.572 kb on - strand at 60.598 kb on - strand at 60.598 kb on - strand at 60.598 kb on - strand at 60.736 kb on - strand, within SMc02574 at 60.736 kb on - strand at 60.927 kb on + strand, within SMc02574 at 60.928 kb on - strand, within SMc02574 at 61.084 kb on + strand, within SMc02574 at 61.084 kb on + strand, within SMc02574 at 61.085 kb on - strand, within SMc02574 at 61.085 kb on - strand, within SMc02574 at 61.085 kb on - strand, within SMc02574 at 61.085 kb on - strand, within SMc02574 at 61.264 kb on - strand at 61.348 kb on + strand at 61.348 kb on + strand at 61.349 kb on - strand at 61.368 kb on - strand at 61.466 kb on + strand at 61.467 kb on - strand at 61.467 kb on - strand at 61.470 kb on + strand at 61.471 kb on - strand at 61.471 kb on - strand at 61.585 kb on - strand at 61.585 kb on - strand at 61.585 kb on - strand at 61.650 kb on + strand, within SMc02575 at 61.650 kb on + strand, within SMc02575 at 61.800 kb on - strand, within SMc02575 at 61.821 kb on + strand, within SMc02575 at 61.821 kb on + strand, within SMc02575 at 61.831 kb on + strand, within SMc02575 at 61.831 kb on + strand, within SMc02575 at 61.832 kb on - strand, within SMc02575 at 61.832 kb on - strand, within SMc02575 at 61.954 kb on + strand, within SMc02575 at 61.955 kb on - strand, within SMc02575 at 62.050 kb on + strand at 62.050 kb on + strand at 62.051 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 59,627 + SMc02572 0.26 -3.9 59,627 + SMc02572 0.26 -5.1 59,628 - SMc02572 0.26 -5.8 60,232 + SMc02573 0.26 -1.0 60,233 - SMc02573 0.26 -0.1 60,572 - -0.4 60,572 - -1.3 60,572 - -1.0 60,598 - -0.3 60,598 - +0.8 60,598 - +0.2 60,736 - SMc02574 0.21 -3.0 60,736 - -0.8 60,927 + SMc02574 0.52 -2.4 60,928 - SMc02574 0.53 -3.8 61,084 + SMc02574 0.78 -5.2 61,084 + SMc02574 0.78 -3.0 61,085 - SMc02574 0.78 -2.7 61,085 - SMc02574 0.78 -1.8 61,085 - SMc02574 0.78 -4.5 61,085 - SMc02574 0.78 -2.3 61,264 - -2.0 61,348 + -1.8 61,348 + -2.3 61,349 - +0.1 61,368 - +0.5 61,466 + +0.2 61,467 - +0.3 61,467 - -0.3 61,470 + +0.7 61,471 - +0.4 61,471 - -0.5 61,585 - +0.2 61,585 - -1.0 61,585 - -1.1 61,650 + SMc02575 0.20 -0.4 61,650 + SMc02575 0.20 +0.2 61,800 - SMc02575 0.47 -1.6 61,821 + SMc02575 0.51 -0.0 61,821 + SMc02575 0.51 -0.1 61,831 + SMc02575 0.53 -0.5 61,831 + SMc02575 0.53 -0.4 61,832 - SMc02575 0.53 -0.4 61,832 - SMc02575 0.53 -0.5 61,954 + SMc02575 0.75 -0.8 61,955 - SMc02575 0.75 -0.3 62,050 + -0.7 62,050 + +1.2 62,051 - -0.6
Or see this region's nucleotide sequence