Strain Fitness in Sinorhizobium meliloti 1021 around SMc02450

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc02448 and SMc02449 are separated by 5 nucleotidesSMc02449 and SMc02450 overlap by 32 nucleotidesSMc02450 and SMc02451 are separated by 160 nucleotides SMc02448: SMc02448 - mutator protein 7,8-dihydro-8-oxoguanine-triphosphatase, at 2,830,074 to 2,830,481 SMc02448 SMc02449: SMc02449 - acetyltransferase, at 2,830,487 to 2,831,413 SMc02449 SMc02450: SMc02450 - bifunctional ornithine acetyltransferase/N-acetylglutamate synthase, at 2,831,382 to 2,832,623 SMc02450 SMc02451: SMc02451 - hypothetical protein, at 2,832,784 to 2,833,638 SMc02451 Position (kb) 2831 2832 2833Strain fitness (log2 ratio) -2 -1 0 1at 2830.472 kb on + strandat 2831.306 kb on - strand, within SMc02449at 2831.306 kb on - strand, within SMc02449at 2831.381 kb on - strandat 2831.393 kb on - strandat 2831.414 kb on - strandat 2831.706 kb on - strand, within SMc02450at 2831.706 kb on - strand, within SMc02450at 2832.144 kb on - strand, within SMc02450at 2832.525 kb on - strandat 2832.786 kb on - strandat 2832.819 kb on - strandat 2833.018 kb on - strand, within SMc02451at 2833.018 kb on - strand, within SMc02451

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
2,830,472 + -0.5
2,831,306 - SMc02449 0.88 -0.0
2,831,306 - SMc02449 0.88 -0.1
2,831,381 - +0.2
2,831,393 - -0.8
2,831,414 - +0.5
2,831,706 - SMc02450 0.26 -0.2
2,831,706 - SMc02450 0.26 -1.7
2,832,144 - SMc02450 0.61 -0.8
2,832,525 - +0.6
2,832,786 - -0.5
2,832,819 - -0.8
2,833,018 - SMc02451 0.27 -2.1
2,833,018 - SMc02451 0.27 +0.3

Or see this region's nucleotide sequence