Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02305 and SMc02306 are separated by 154 nucleotides SMc02306 and SMc02307 are separated by 64 nucleotides SMc02307 and SMc02308 overlap by 4 nucleotides SMc02308 and SMc02309 are separated by 13 nucleotides
SMc02305: SMc02305 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 677,941 to 679,233
SMc02305
SMc02306: SMc02306 - hypothetical protein, at 679,388 to 679,828
SMc02306
SMc02307: SMc02307 - histidinol dehydrogenase, at 679,893 to 681,197
SMc02307
SMc02308: SMc02308 - hypothetical protein, at 681,194 to 681,670
SMc02308
SMc02309: SMc02309 - arsenate reductase, at 681,684 to 682,163
SMc02309
Position (kb) 679
680
681
682 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 679.273 kb on + strand at 679.274 kb on - strand at 679.329 kb on + strand at 679.329 kb on + strand at 679.329 kb on + strand at 679.330 kb on - strand at 679.484 kb on + strand, within SMc02306 at 680.047 kb on - strand, within SMc02307 at 680.062 kb on + strand, within SMc02307 at 680.075 kb on + strand, within SMc02307 at 680.143 kb on + strand, within SMc02307 at 680.217 kb on + strand, within SMc02307 at 680.218 kb on - strand, within SMc02307 at 680.218 kb on - strand, within SMc02307 at 680.280 kb on + strand, within SMc02307 at 680.280 kb on + strand, within SMc02307 at 680.281 kb on - strand, within SMc02307 at 680.281 kb on - strand, within SMc02307 at 680.445 kb on + strand, within SMc02307 at 680.484 kb on + strand, within SMc02307 at 680.539 kb on - strand, within SMc02307 at 680.976 kb on + strand, within SMc02307 at 680.977 kb on - strand, within SMc02307 at 680.977 kb on - strand, within SMc02307 at 681.051 kb on + strand, within SMc02307 at 681.052 kb on - strand, within SMc02307 at 681.052 kb on - strand, within SMc02307 at 681.454 kb on + strand, within SMc02308 at 681.467 kb on + strand, within SMc02308 at 681.467 kb on + strand, within SMc02308 at 681.488 kb on + strand, within SMc02308 at 681.488 kb on + strand, within SMc02308 at 681.808 kb on - strand, within SMc02309 at 681.808 kb on - strand, within SMc02309 at 681.808 kb on - strand, within SMc02309 at 681.808 kb on - strand, within SMc02309 at 681.808 kb on - strand, within SMc02309 at 681.808 kb on - strand, within SMc02309 at 681.808 kb on - strand, within SMc02309 at 681.808 kb on - strand, within SMc02309 at 681.930 kb on + strand, within SMc02309 at 681.930 kb on + strand, within SMc02309 at 682.013 kb on - strand, within SMc02309 at 682.015 kb on - strand, within SMc02309 at 682.015 kb on - strand, within SMc02309
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 679,273 + -0.6 679,274 - -2.3 679,329 + -0.3 679,329 + -0.2 679,329 + +0.7 679,330 - -3.3 679,484 + SMc02306 0.22 +0.5 680,047 - SMc02307 0.12 -3.0 680,062 + SMc02307 0.13 -1.3 680,075 + SMc02307 0.14 -1.6 680,143 + SMc02307 0.19 -4.9 680,217 + SMc02307 0.25 -2.3 680,218 - SMc02307 0.25 +0.1 680,218 - SMc02307 0.25 -0.9 680,280 + SMc02307 0.30 -3.5 680,280 + SMc02307 0.30 -4.2 680,281 - SMc02307 0.30 -0.3 680,281 - SMc02307 0.30 -4.2 680,445 + SMc02307 0.42 -0.9 680,484 + SMc02307 0.45 -3.4 680,539 - SMc02307 0.50 -1.4 680,976 + SMc02307 0.83 -0.6 680,977 - SMc02307 0.83 -1.6 680,977 - SMc02307 0.83 +0.7 681,051 + SMc02307 0.89 -2.8 681,052 - SMc02307 0.89 -0.3 681,052 - SMc02307 0.89 -2.0 681,454 + SMc02308 0.55 +0.3 681,467 + SMc02308 0.57 +0.0 681,467 + SMc02308 0.57 +0.5 681,488 + SMc02308 0.62 +2.0 681,488 + SMc02308 0.62 +0.4 681,808 - SMc02309 0.26 -0.1 681,808 - SMc02309 0.26 +0.7 681,808 - SMc02309 0.26 +1.3 681,808 - SMc02309 0.26 +0.0 681,808 - SMc02309 0.26 -0.6 681,808 - SMc02309 0.26 +0.7 681,808 - SMc02309 0.26 +0.7 681,808 - SMc02309 0.26 +0.0 681,930 + SMc02309 0.51 -0.6 681,930 + SMc02309 0.51 -0.9 682,013 - SMc02309 0.69 -0.4 682,015 - SMc02309 0.69 +0.0 682,015 - SMc02309 0.69 +0.4
Or see this region's nucleotide sequence