Strain Fitness in Sinorhizobium meliloti 1021 around SMc01427

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01426 and SMc01427 are separated by 102 nucleotidesSMc01427 and SMc01428 are separated by 156 nucleotidesSMc01428 and SMc01429 are separated by 310 nucleotides SMc01426: SMc01426 - hypothetical protein, at 2,271,369 to 2,272,097 SMc01426 SMc01427: SMc01427 - hypothetical protein, at 2,272,200 to 2,272,424 SMc01427 SMc01428: SMc01428 - cold shock transcription regulator protein, at 2,272,581 to 2,272,790 SMc01428 SMc01429: SMc01429 - oxidoreductase, at 2,273,101 to 2,273,946 SMc01429 Position (kb) 2272 2273Strain fitness (log2 ratio) -1 0 1at 2271.289 kb on + strandat 2271.411 kb on + strandat 2271.411 kb on + strandat 2271.700 kb on - strand, within SMc01426at 2271.721 kb on - strand, within SMc01426at 2271.759 kb on - strand, within SMc01426at 2271.810 kb on + strand, within SMc01426at 2271.810 kb on + strand, within SMc01426at 2271.810 kb on + strand, within SMc01426at 2271.811 kb on - strand, within SMc01426at 2271.934 kb on - strand, within SMc01426at 2272.095 kb on + strandat 2272.124 kb on - strandat 2272.124 kb on - strandat 2272.399 kb on + strand, within SMc01427at 2272.508 kb on + strandat 2272.509 kb on - strandat 2272.538 kb on - strandat 2272.558 kb on + strandat 2272.648 kb on - strand, within SMc01428at 2272.701 kb on - strand, within SMc01428at 2272.773 kb on + strandat 2272.774 kb on - strandat 2272.926 kb on + strandat 2272.926 kb on + strandat 2272.927 kb on - strandat 2272.930 kb on + strandat 2272.951 kb on - strandat 2273.033 kb on + strandat 2273.034 kb on - strandat 2273.063 kb on - strandat 2273.269 kb on + strand, within SMc01429

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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2,271,289 + +0.6
2,271,411 + +0.8
2,271,411 + +0.5
2,271,700 - SMc01426 0.45 +0.0
2,271,721 - SMc01426 0.48 +1.0
2,271,759 - SMc01426 0.53 -1.3
2,271,810 + SMc01426 0.60 -0.4
2,271,810 + SMc01426 0.60 -0.7
2,271,810 + SMc01426 0.60 -0.2
2,271,811 - SMc01426 0.61 +0.4
2,271,934 - SMc01426 0.78 +0.6
2,272,095 + -0.3
2,272,124 - +0.6
2,272,124 - -0.7
2,272,399 + SMc01427 0.88 -1.1
2,272,508 + +0.1
2,272,509 - -0.2
2,272,538 - -0.3
2,272,558 + -0.2
2,272,648 - SMc01428 0.32 -0.2
2,272,701 - SMc01428 0.57 -0.2
2,272,773 + -0.3
2,272,774 - +1.0
2,272,926 + -0.7
2,272,926 + -0.6
2,272,927 - +1.4
2,272,930 + -0.2
2,272,951 - -1.3
2,273,033 + +0.4
2,273,034 - -0.4
2,273,063 - +0.7
2,273,269 + SMc01429 0.20 -0.5

Or see this region's nucleotide sequence