Strain Fitness in Sinorhizobium meliloti 1021 around SMc01139

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01140 and SMc01139 are separated by 278 nucleotidesSMc01139 and SMc01138 are separated by 175 nucleotides SMc01140: SMc01140 - SIGMA54 modulation protein, at 410,413 to 410,985 SMc01140 SMc01139: SMc01139 - RNA polymerase factor sigma-54, at 411,264 to 412,808 SMc01139 SMc01138: SMc01138 - ABC transporter ATP-binding protein, at 412,984 to 413,796 SMc01138 Position (kb) 411 412 413Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 410.425 kb on - strandat 410.425 kb on - strandat 410.449 kb on - strandat 411.112 kb on + strandat 411.112 kb on + strandat 411.112 kb on + strandat 411.113 kb on - strandat 411.113 kb on - strandat 411.139 kb on - strandat 411.238 kb on - strandat 411.527 kb on - strand, within SMc01139at 411.562 kb on + strand, within SMc01139at 411.562 kb on + strand, within SMc01139at 411.563 kb on - strand, within SMc01139at 411.563 kb on - strand, within SMc01139at 411.813 kb on + strand, within SMc01139at 411.826 kb on + strand, within SMc01139at 412.289 kb on - strand, within SMc01139at 412.870 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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410,425 - -0.3
410,425 - +0.4
410,449 - -0.5
411,112 + -1.3
411,112 + -1.3
411,112 + +0.6
411,113 - +0.2
411,113 - +0.4
411,139 - +0.5
411,238 - -0.9
411,527 - SMc01139 0.17 -4.2
411,562 + SMc01139 0.19 -5.4
411,562 + SMc01139 0.19 -3.4
411,563 - SMc01139 0.19 -2.9
411,563 - SMc01139 0.19 -4.7
411,813 + SMc01139 0.36 -1.2
411,826 + SMc01139 0.36 -2.2
412,289 - SMc01139 0.66 -2.3
412,870 + -1.4

Or see this region's nucleotide sequence