Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00668 and SMc00667 overlap by 13 nucleotides SMc00667 and SMc00666 are separated by 54 nucleotides SMc00666 and SMc00665 are separated by 74 nucleotides SMc00665 and SMc00664 are separated by 144 nucleotides SMc00664 and SMc00663 are separated by 93 nucleotides
SMc00668: SMc00668 - hypothetical protein, at 2,912,212 to 2,913,537
SMc00668
SMc00667: SMc00667 - hypothetical protein, at 2,913,525 to 2,914,118
SMc00667
SMc00666: SMc00666 - hypothetical protein, at 2,914,173 to 2,914,406
SMc00666
SMc00665: SMc00665 - hypothetical protein, at 2,914,481 to 2,914,669
SMc00665
SMc00664: SMc00664 - signal peptide protein, at 2,914,814 to 2,915,014
SMc00664
SMc00663: SMc00663 - hypothetical protein, at 2,915,108 to 2,915,308
SMc00663
Position (kb)
2913
2914
2915 Strain fitness (log2 ratio)
-2
-1
0
1 at 2912.609 kb on + strand, within SMc00668 at 2912.707 kb on - strand, within SMc00668 at 2912.755 kb on + strand, within SMc00668 at 2912.755 kb on + strand, within SMc00668 at 2912.803 kb on + strand, within SMc00668 at 2912.899 kb on - strand, within SMc00668 at 2913.203 kb on - strand, within SMc00668 at 2913.366 kb on - strand, within SMc00668 at 2913.460 kb on + strand at 2913.462 kb on + strand at 2913.463 kb on - strand at 2913.463 kb on - strand at 2913.463 kb on - strand at 2913.473 kb on + strand at 2913.474 kb on - strand at 2913.474 kb on - strand at 2913.474 kb on - strand at 2913.482 kb on + strand at 2913.483 kb on - strand at 2913.483 kb on - strand at 2913.483 kb on - strand at 2913.483 kb on - strand at 2913.567 kb on + strand at 2913.568 kb on - strand at 2913.575 kb on + strand at 2913.576 kb on - strand at 2913.576 kb on - strand at 2913.661 kb on + strand, within SMc00667 at 2913.662 kb on - strand, within SMc00667 at 2914.156 kb on + strand at 2914.357 kb on + strand, within SMc00666 at 2914.357 kb on + strand, within SMc00666 at 2914.357 kb on + strand, within SMc00666 at 2914.357 kb on + strand, within SMc00666 at 2914.357 kb on + strand, within SMc00666 at 2914.358 kb on - strand, within SMc00666 at 2914.358 kb on - strand, within SMc00666 at 2914.358 kb on - strand, within SMc00666 at 2914.358 kb on - strand, within SMc00666 at 2914.602 kb on + strand, within SMc00665 at 2914.602 kb on + strand, within SMc00665 at 2914.696 kb on + strand at 2914.863 kb on + strand, within SMc00664 at 2914.883 kb on + strand, within SMc00664 at 2914.889 kb on + strand, within SMc00664 at 2914.889 kb on + strand, within SMc00664 at 2914.890 kb on - strand, within SMc00664 at 2914.961 kb on - strand, within SMc00664 at 2914.961 kb on - strand, within SMc00664
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 2,912,609 + SMc00668 0.30 -0.0 2,912,707 - SMc00668 0.37 -1.1 2,912,755 + SMc00668 0.41 -1.0 2,912,755 + SMc00668 0.41 -0.3 2,912,803 + SMc00668 0.45 +0.5 2,912,899 - SMc00668 0.52 +0.3 2,913,203 - SMc00668 0.75 +0.7 2,913,366 - SMc00668 0.87 -0.9 2,913,460 + +0.1 2,913,462 + +0.7 2,913,463 - -1.2 2,913,463 - +1.1 2,913,463 - +0.9 2,913,473 + +0.1 2,913,474 - -0.7 2,913,474 - -0.3 2,913,474 - -0.3 2,913,482 + +1.5 2,913,483 - -0.5 2,913,483 - +0.2 2,913,483 - -0.6 2,913,483 - -0.3 2,913,567 + +1.7 2,913,568 - -0.0 2,913,575 + +0.1 2,913,576 - +1.2 2,913,576 - -0.2 2,913,661 + SMc00667 0.23 -0.6 2,913,662 - SMc00667 0.23 -0.8 2,914,156 + -0.6 2,914,357 + SMc00666 0.79 -0.2 2,914,357 + SMc00666 0.79 -0.5 2,914,357 + SMc00666 0.79 -2.2 2,914,357 + SMc00666 0.79 -0.3 2,914,357 + SMc00666 0.79 -0.0 2,914,358 - SMc00666 0.79 -0.3 2,914,358 - SMc00666 0.79 -0.1 2,914,358 - SMc00666 0.79 +0.4 2,914,358 - SMc00666 0.79 +1.7 2,914,602 + SMc00665 0.64 -0.1 2,914,602 + SMc00665 0.64 -0.6 2,914,696 + -0.3 2,914,863 + SMc00664 0.24 +0.2 2,914,883 + SMc00664 0.34 +0.1 2,914,889 + SMc00664 0.37 -0.6 2,914,889 + SMc00664 0.37 -0.1 2,914,890 - SMc00664 0.38 +0.2 2,914,961 - SMc00664 0.73 +1.5 2,914,961 - SMc00664 0.73 +0.7
Or see this region's nucleotide sequence