Strain Fitness in Sinorhizobium meliloti 1021 around SMc00667

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00668 and SMc00667 overlap by 13 nucleotidesSMc00667 and SMc00666 are separated by 54 nucleotidesSMc00666 and SMc00665 are separated by 74 nucleotidesSMc00665 and SMc00664 are separated by 144 nucleotidesSMc00664 and SMc00663 are separated by 93 nucleotides SMc00668: SMc00668 - hypothetical protein, at 2,912,212 to 2,913,537 SMc00668 SMc00667: SMc00667 - hypothetical protein, at 2,913,525 to 2,914,118 SMc00667 SMc00666: SMc00666 - hypothetical protein, at 2,914,173 to 2,914,406 SMc00666 SMc00665: SMc00665 - hypothetical protein, at 2,914,481 to 2,914,669 SMc00665 SMc00664: SMc00664 - signal peptide protein, at 2,914,814 to 2,915,014 SMc00664 SMc00663: SMc00663 - hypothetical protein, at 2,915,108 to 2,915,308 SMc00663 Position (kb) 2913 2914 2915Strain fitness (log2 ratio) -2 -1 0 1at 2912.609 kb on + strand, within SMc00668at 2912.707 kb on - strand, within SMc00668at 2912.755 kb on + strand, within SMc00668at 2912.755 kb on + strand, within SMc00668at 2912.803 kb on + strand, within SMc00668at 2912.899 kb on - strand, within SMc00668at 2913.203 kb on - strand, within SMc00668at 2913.366 kb on - strand, within SMc00668at 2913.460 kb on + strandat 2913.462 kb on + strandat 2913.463 kb on - strandat 2913.463 kb on - strandat 2913.463 kb on - strandat 2913.473 kb on + strandat 2913.474 kb on - strandat 2913.474 kb on - strandat 2913.474 kb on - strandat 2913.482 kb on + strandat 2913.483 kb on - strandat 2913.483 kb on - strandat 2913.483 kb on - strandat 2913.483 kb on - strandat 2913.567 kb on + strandat 2913.568 kb on - strandat 2913.575 kb on + strandat 2913.576 kb on - strandat 2913.576 kb on - strandat 2913.661 kb on + strand, within SMc00667at 2913.662 kb on - strand, within SMc00667at 2914.156 kb on + strandat 2914.357 kb on + strand, within SMc00666at 2914.357 kb on + strand, within SMc00666at 2914.357 kb on + strand, within SMc00666at 2914.357 kb on + strand, within SMc00666at 2914.357 kb on + strand, within SMc00666at 2914.358 kb on - strand, within SMc00666at 2914.358 kb on - strand, within SMc00666at 2914.358 kb on - strand, within SMc00666at 2914.358 kb on - strand, within SMc00666at 2914.602 kb on + strand, within SMc00665at 2914.602 kb on + strand, within SMc00665at 2914.696 kb on + strandat 2914.863 kb on + strand, within SMc00664at 2914.883 kb on + strand, within SMc00664at 2914.889 kb on + strand, within SMc00664at 2914.889 kb on + strand, within SMc00664at 2914.890 kb on - strand, within SMc00664at 2914.961 kb on - strand, within SMc00664at 2914.961 kb on - strand, within SMc00664

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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2,912,609 + SMc00668 0.30 -0.0
2,912,707 - SMc00668 0.37 -1.1
2,912,755 + SMc00668 0.41 -1.0
2,912,755 + SMc00668 0.41 -0.3
2,912,803 + SMc00668 0.45 +0.5
2,912,899 - SMc00668 0.52 +0.3
2,913,203 - SMc00668 0.75 +0.7
2,913,366 - SMc00668 0.87 -0.9
2,913,460 + +0.1
2,913,462 + +0.7
2,913,463 - -1.2
2,913,463 - +1.1
2,913,463 - +0.9
2,913,473 + +0.1
2,913,474 - -0.7
2,913,474 - -0.3
2,913,474 - -0.3
2,913,482 + +1.5
2,913,483 - -0.5
2,913,483 - +0.2
2,913,483 - -0.6
2,913,483 - -0.3
2,913,567 + +1.7
2,913,568 - -0.0
2,913,575 + +0.1
2,913,576 - +1.2
2,913,576 - -0.2
2,913,661 + SMc00667 0.23 -0.6
2,913,662 - SMc00667 0.23 -0.8
2,914,156 + -0.6
2,914,357 + SMc00666 0.79 -0.2
2,914,357 + SMc00666 0.79 -0.5
2,914,357 + SMc00666 0.79 -2.2
2,914,357 + SMc00666 0.79 -0.3
2,914,357 + SMc00666 0.79 -0.0
2,914,358 - SMc00666 0.79 -0.3
2,914,358 - SMc00666 0.79 -0.1
2,914,358 - SMc00666 0.79 +0.4
2,914,358 - SMc00666 0.79 +1.7
2,914,602 + SMc00665 0.64 -0.1
2,914,602 + SMc00665 0.64 -0.6
2,914,696 + -0.3
2,914,863 + SMc00664 0.24 +0.2
2,914,883 + SMc00664 0.34 +0.1
2,914,889 + SMc00664 0.37 -0.6
2,914,889 + SMc00664 0.37 -0.1
2,914,890 - SMc00664 0.38 +0.2
2,914,961 - SMc00664 0.73 +1.5
2,914,961 - SMc00664 0.73 +0.7

Or see this region's nucleotide sequence