Strain Fitness in Sinorhizobium meliloti 1021 around SMc00053

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00051 and SMc00052 overlap by 4 nucleotidesSMc00052 and SMc00053 overlap by 1 nucleotidesSMc00053 and SMc00054 are separated by 6 nucleotides SMc00051: SMc00051 - monovalent cation/H+ antiporter subunit A, at 1,085,034 to 1,087,409 SMc00051 SMc00052: SMc00052 - monovalent cation/H+ antiporter subunit B, at 1,087,406 to 1,087,825 SMc00052 SMc00053: SMc00053 - monovalent cation/H+ antiporter subunit C, at 1,087,825 to 1,088,202 SMc00053 SMc00054: SMc00054 - monovalent cation/H+ antiporter subunit D, at 1,088,209 to 1,089,774 SMc00054 Position (kb) 1087 1088 1089Strain fitness (log2 ratio) -1 0 1at 1088.119 kb on + strand, within SMc00053

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,088,119 + SMc00053 0.78 -1.7

Or see this region's nucleotide sequence