Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1156 and SMa1158 are separated by 109 nucleotides SMa1158 and SMa1159 are separated by 180 nucleotides SMa1159 and SMa1160 overlap by 53 nucleotides
SMa1156: SMa1156 - alcohol dehydrogenase, at 632,973 to 634,046
SMa1156
SMa1158: SMa1158 - hypothetical protein, at 634,156 to 634,998
SMa1158
SMa1159: SMa1159 - hypothetical protein, at 635,179 to 635,622
SMa1159
SMa1160: SMa1160 - hypothetical protein, at 635,570 to 636,151
SMa1160
Position (kb) 634
635 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 633.159 kb on - strand, within SMa1156 at 633.161 kb on + strand, within SMa1156 at 633.162 kb on - strand, within SMa1156 at 633.239 kb on + strand, within SMa1156 at 633.239 kb on + strand, within SMa1156 at 633.240 kb on - strand, within SMa1156 at 633.252 kb on - strand, within SMa1156 at 633.652 kb on + strand, within SMa1156 at 633.764 kb on + strand, within SMa1156 at 633.764 kb on + strand, within SMa1156 at 633.765 kb on - strand, within SMa1156 at 633.818 kb on - strand, within SMa1156 at 633.930 kb on + strand, within SMa1156 at 633.945 kb on - strand at 633.945 kb on - strand at 634.196 kb on - strand at 634.247 kb on + strand, within SMa1158 at 634.513 kb on + strand, within SMa1158 at 634.537 kb on + strand, within SMa1158 at 634.688 kb on - strand, within SMa1158 at 634.879 kb on - strand, within SMa1158 at 634.914 kb on + strand at 634.920 kb on - strand at 634.976 kb on - strand at 634.976 kb on - strand at 634.976 kb on - strand at 635.058 kb on - strand at 635.234 kb on - strand, within SMa1159 at 635.236 kb on - strand, within SMa1159 at 635.260 kb on + strand, within SMa1159 at 635.261 kb on - strand, within SMa1159 at 635.311 kb on + strand, within SMa1159 at 635.323 kb on + strand, within SMa1159 at 635.431 kb on + strand, within SMa1159 at 635.431 kb on + strand, within SMa1159 at 635.432 kb on - strand, within SMa1159 at 635.437 kb on - strand, within SMa1159 at 635.437 kb on - strand, within SMa1159 at 635.437 kb on - strand, within SMa1159 at 635.449 kb on - strand, within SMa1159 at 635.491 kb on + strand, within SMa1159 at 635.571 kb on + strand at 635.572 kb on - strand at 635.687 kb on + strand, within SMa1160 at 635.856 kb on + strand, within SMa1160 at 635.856 kb on + strand, within SMa1160 at 635.915 kb on - strand, within SMa1160 at 635.915 kb on - strand, within SMa1160
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 633,159 - SMa1156 0.17 +0.7 633,161 + SMa1156 0.18 -1.0 633,162 - SMa1156 0.18 +0.1 633,239 + SMa1156 0.25 +0.4 633,239 + SMa1156 0.25 +0.8 633,240 - SMa1156 0.25 +0.5 633,252 - SMa1156 0.26 -1.8 633,652 + SMa1156 0.63 +0.3 633,764 + SMa1156 0.74 -1.2 633,764 + SMa1156 0.74 +0.9 633,765 - SMa1156 0.74 -0.2 633,818 - SMa1156 0.79 +1.1 633,930 + SMa1156 0.89 +0.4 633,945 - -1.2 633,945 - +0.1 634,196 - +0.4 634,247 + SMa1158 0.11 -0.1 634,513 + SMa1158 0.42 -0.9 634,537 + SMa1158 0.45 +0.4 634,688 - SMa1158 0.63 +1.6 634,879 - SMa1158 0.86 +0.9 634,914 + +0.2 634,920 - -0.5 634,976 - +1.2 634,976 - +1.3 634,976 - +0.1 635,058 - +0.8 635,234 - SMa1159 0.12 -0.7 635,236 - SMa1159 0.13 -0.3 635,260 + SMa1159 0.18 +0.2 635,261 - SMa1159 0.18 +0.3 635,311 + SMa1159 0.30 +0.7 635,323 + SMa1159 0.32 +0.1 635,431 + SMa1159 0.57 +0.5 635,431 + SMa1159 0.57 +0.7 635,432 - SMa1159 0.57 +0.4 635,437 - SMa1159 0.58 -0.4 635,437 - SMa1159 0.58 +0.3 635,437 - SMa1159 0.58 +0.3 635,449 - SMa1159 0.61 +3.0 635,491 + SMa1159 0.70 +1.4 635,571 + +0.1 635,572 - +0.5 635,687 + SMa1160 0.20 +0.3 635,856 + SMa1160 0.49 +0.6 635,856 + SMa1160 0.49 +0.6 635,915 - SMa1160 0.59 +1.4 635,915 - SMa1160 0.59 -0.8
Or see this region's nucleotide sequence