Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0748 and SMa5003 are separated by 232 nucleotides SMa5003 and SMa0750 are separated by 70 nucleotides SMa0750 and SMa0751 are separated by 147 nucleotides
SMa0748: SMa0748 - MucR family transcriptional regulator, at 402,138 to 402,587
SMa0748
SMa5003: SMa5003 - hypothetical protein, at 402,820 to 403,107
SMa5003
SMa0750: SMa0750 - LysR family transcriptional regulator, at 403,178 to 404,056
SMa0750
SMa0751: SMa0751 - Ring-hydroxylating dioxygenase, at 404,204 to 405,442
SMa0751
Position (kb) 403
404
405 Strain fitness (log2 ratio) -1
0
1
2 at 402.199 kb on - strand, within SMa0748 at 402.479 kb on - strand, within SMa0748 at 402.490 kb on - strand, within SMa0748 at 402.626 kb on + strand at 402.644 kb on - strand at 402.704 kb on - strand at 402.704 kb on - strand at 402.704 kb on - strand at 402.757 kb on - strand at 402.821 kb on + strand at 402.857 kb on + strand, within SMa5003 at 402.911 kb on + strand, within SMa5003 at 402.911 kb on + strand, within SMa5003 at 402.911 kb on + strand, within SMa5003 at 402.911 kb on + strand, within SMa5003 at 402.912 kb on - strand, within SMa5003 at 402.912 kb on - strand, within SMa5003 at 402.924 kb on - strand, within SMa5003 at 402.971 kb on + strand, within SMa5003 at 402.973 kb on + strand, within SMa5003 at 402.973 kb on + strand, within SMa5003 at 402.985 kb on + strand, within SMa5003 at 403.048 kb on - strand, within SMa5003 at 403.180 kb on - strand at 403.383 kb on + strand, within SMa0750 at 403.383 kb on + strand, within SMa0750 at 403.384 kb on - strand, within SMa0750 at 403.384 kb on - strand, within SMa0750 at 403.395 kb on + strand, within SMa0750 at 403.395 kb on + strand, within SMa0750 at 403.587 kb on + strand, within SMa0750 at 403.730 kb on + strand, within SMa0750 at 403.730 kb on + strand, within SMa0750 at 404.070 kb on + strand at 404.071 kb on - strand at 404.071 kb on - strand at 404.071 kb on - strand at 404.071 kb on - strand at 404.092 kb on + strand at 404.165 kb on + strand at 404.279 kb on + strand at 404.279 kb on + strand at 404.280 kb on - strand at 404.280 kb on - strand at 404.282 kb on - strand at 404.298 kb on - strand at 404.324 kb on + strand at 404.325 kb on - strand at 404.325 kb on - strand at 404.339 kb on + strand, within SMa0751 at 404.340 kb on - strand, within SMa0751 at 404.374 kb on + strand, within SMa0751 at 404.378 kb on + strand, within SMa0751 at 404.379 kb on - strand, within SMa0751 at 404.379 kb on - strand, within SMa0751 at 404.388 kb on + strand, within SMa0751 at 404.389 kb on - strand, within SMa0751 at 404.402 kb on + strand, within SMa0751 at 404.540 kb on + strand, within SMa0751 at 404.540 kb on + strand, within SMa0751 at 404.540 kb on + strand, within SMa0751 at 404.648 kb on + strand, within SMa0751 at 404.648 kb on + strand, within SMa0751 at 404.649 kb on - strand, within SMa0751 at 404.649 kb on - strand, within SMa0751 at 404.650 kb on + strand, within SMa0751 at 404.651 kb on - strand, within SMa0751 at 404.708 kb on + strand, within SMa0751 at 404.755 kb on + strand, within SMa0751 at 404.810 kb on + strand, within SMa0751 at 404.899 kb on + strand, within SMa0751 at 404.899 kb on + strand, within SMa0751 at 404.900 kb on - strand, within SMa0751 at 404.900 kb on - strand, within SMa0751 at 404.992 kb on + strand, within SMa0751 at 405.021 kb on - strand, within SMa0751 at 405.023 kb on - strand, within SMa0751 at 405.023 kb on - strand, within SMa0751 at 405.023 kb on - strand, within SMa0751
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 402,199 - SMa0748 0.14 +1.4 402,479 - SMa0748 0.76 +0.3 402,490 - SMa0748 0.78 -1.2 402,626 + +0.2 402,644 - -0.3 402,704 - -0.8 402,704 - +0.8 402,704 - -0.6 402,757 - +1.1 402,821 + +0.8 402,857 + SMa5003 0.13 +0.8 402,911 + SMa5003 0.32 +0.1 402,911 + SMa5003 0.32 -0.9 402,911 + SMa5003 0.32 -0.1 402,911 + SMa5003 0.32 -0.3 402,912 - SMa5003 0.32 -0.4 402,912 - SMa5003 0.32 -0.5 402,924 - SMa5003 0.36 +0.8 402,971 + SMa5003 0.52 +0.2 402,973 + SMa5003 0.53 +0.2 402,973 + SMa5003 0.53 +0.2 402,985 + SMa5003 0.57 +1.0 403,048 - SMa5003 0.79 +1.3 403,180 - +0.1 403,383 + SMa0750 0.23 -0.7 403,383 + SMa0750 0.23 +0.2 403,384 - SMa0750 0.23 +0.3 403,384 - SMa0750 0.23 +0.8 403,395 + SMa0750 0.25 +0.4 403,395 + SMa0750 0.25 +0.9 403,587 + SMa0750 0.47 +1.6 403,730 + SMa0750 0.63 +0.3 403,730 + SMa0750 0.63 +0.5 404,070 + -0.1 404,071 - -1.7 404,071 - +0.8 404,071 - -0.3 404,071 - +0.7 404,092 + +0.4 404,165 + -0.5 404,279 + +0.8 404,279 + +0.4 404,280 - +1.0 404,280 - +0.3 404,282 - +2.0 404,298 - +1.2 404,324 + +0.3 404,325 - +0.1 404,325 - +1.6 404,339 + SMa0751 0.11 +0.4 404,340 - SMa0751 0.11 -0.2 404,374 + SMa0751 0.14 -0.6 404,378 + SMa0751 0.14 +0.1 404,379 - SMa0751 0.14 +0.3 404,379 - SMa0751 0.14 +0.0 404,388 + SMa0751 0.15 +0.4 404,389 - SMa0751 0.15 +1.3 404,402 + SMa0751 0.16 -0.3 404,540 + SMa0751 0.27 +0.6 404,540 + SMa0751 0.27 -0.4 404,540 + SMa0751 0.27 -0.9 404,648 + SMa0751 0.36 +0.2 404,648 + SMa0751 0.36 +0.4 404,649 - SMa0751 0.36 +0.6 404,649 - SMa0751 0.36 -0.1 404,650 + SMa0751 0.36 -0.0 404,651 - SMa0751 0.36 -0.4 404,708 + SMa0751 0.41 +0.2 404,755 + SMa0751 0.44 -0.0 404,810 + SMa0751 0.49 -0.0 404,899 + SMa0751 0.56 -0.3 404,899 + SMa0751 0.56 +1.0 404,900 - SMa0751 0.56 -0.4 404,900 - SMa0751 0.56 -0.9 404,992 + SMa0751 0.64 +0.6 405,021 - SMa0751 0.66 +0.2 405,023 - SMa0751 0.66 -0.6 405,023 - SMa0751 0.66 -0.4 405,023 - SMa0751 0.66 -0.3
Or see this region's nucleotide sequence