Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0541 and SMa0543 are separated by 138 nucleotides SMa0543 and SMa0545 are separated by 240 nucleotides SMa0545 and SMa0548 overlap by 1 nucleotides
SMa0541: SMa0541 - hypothetical protein, at 289,833 to 290,228
SMa0541
SMa0543: SMa0543 - hypothetical protein, at 290,367 to 290,957
SMa0543
SMa0545: SMa0545 - hypothetical protein, at 291,198 to 291,638
SMa0545
SMa0548: SMa0548 - hypothetical protein, at 291,638 to 291,877
SMa0548
Position (kb) 290
291 Strain fitness (log2 ratio) -2
-1
0
1 at 289.451 kb on + strand at 289.451 kb on + strand at 289.521 kb on - strand at 289.551 kb on + strand at 289.631 kb on + strand at 289.638 kb on - strand at 289.654 kb on + strand at 289.729 kb on - strand at 289.841 kb on + strand at 289.842 kb on - strand at 289.957 kb on - strand, within SMa0541 at 289.957 kb on - strand, within SMa0541 at 290.050 kb on - strand, within SMa0541 at 290.051 kb on + strand, within SMa0541 at 290.051 kb on + strand, within SMa0541 at 290.051 kb on + strand, within SMa0541 at 290.051 kb on + strand, within SMa0541 at 290.051 kb on + strand, within SMa0541 at 290.051 kb on + strand, within SMa0541 at 290.051 kb on + strand, within SMa0541 at 290.051 kb on + strand, within SMa0541 at 290.052 kb on - strand, within SMa0541 at 290.052 kb on - strand, within SMa0541 at 290.091 kb on + strand, within SMa0541 at 290.127 kb on + strand, within SMa0541 at 290.227 kb on - strand at 290.227 kb on - strand at 290.335 kb on + strand at 290.335 kb on + strand at 290.336 kb on - strand at 290.372 kb on - strand at 290.372 kb on - strand at 290.561 kb on + strand, within SMa0543 at 290.567 kb on - strand, within SMa0543 at 290.948 kb on + strand at 290.955 kb on + strand at 291.107 kb on - strand at 291.231 kb on + strand at 291.290 kb on + strand, within SMa0545 at 291.290 kb on + strand, within SMa0545 at 291.290 kb on + strand, within SMa0545 at 291.290 kb on + strand, within SMa0545 at 291.337 kb on + strand, within SMa0545 at 291.337 kb on + strand, within SMa0545 at 291.350 kb on - strand, within SMa0545 at 291.490 kb on + strand, within SMa0545
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 289,451 + +0.5 289,451 + +0.3 289,521 - -0.6 289,551 + +0.2 289,631 + +0.0 289,638 - -0.2 289,654 + -0.7 289,729 - -0.0 289,841 + +0.6 289,842 - -0.2 289,957 - SMa0541 0.31 +0.1 289,957 - SMa0541 0.31 +0.7 290,050 - SMa0541 0.55 -0.0 290,051 + SMa0541 0.55 -0.2 290,051 + SMa0541 0.55 +0.2 290,051 + SMa0541 0.55 -0.2 290,051 + SMa0541 0.55 +0.8 290,051 + SMa0541 0.55 -0.5 290,051 + SMa0541 0.55 +0.2 290,051 + SMa0541 0.55 +0.5 290,051 + SMa0541 0.55 -1.3 290,052 - SMa0541 0.55 +0.5 290,052 - SMa0541 0.55 -2.6 290,091 + SMa0541 0.65 -0.4 290,127 + SMa0541 0.74 +0.4 290,227 - -0.9 290,227 - -0.4 290,335 + +1.1 290,335 + +0.6 290,336 - -0.4 290,372 - -1.5 290,372 - -0.6 290,561 + SMa0543 0.33 +1.3 290,567 - SMa0543 0.34 -0.6 290,948 + -0.9 290,955 + +0.2 291,107 - -0.3 291,231 + -0.6 291,290 + SMa0545 0.21 -0.9 291,290 + SMa0545 0.21 +0.5 291,290 + SMa0545 0.21 +0.1 291,290 + SMa0545 0.21 -0.8 291,337 + SMa0545 0.32 -0.1 291,337 + SMa0545 0.32 -1.6 291,350 - SMa0545 0.34 -0.6 291,490 + SMa0545 0.66 -0.1
Or see this region's nucleotide sequence