Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0412 and SMa0414 are separated by 629 nucleotides SMa0414 and SMa0417 are separated by 60 nucleotides SMa0417 and SMa5020 are separated by 31 nucleotides
SMa0412: SMa0412 - hypothetical protein, at 223,861 to 224,175
SMa0412
SMa0414: SMa0414 - hypothetical protein, at 224,805 to 226,475
SMa0414
SMa0417: SMa0417 - hypothetical protein, at 226,536 to 227,393
SMa0417
SMa5020: SMa5020 - hypothetical protein, at 227,425 to 228,318
SMa5020
Position (kb) 224
225
226
227 Strain fitness (log2 ratio) -2
-1
0
1
2 at 223.810 kb on + strand at 223.811 kb on - strand at 223.862 kb on + strand at 223.910 kb on + strand, within SMa0412 at 223.910 kb on + strand, within SMa0412 at 223.910 kb on + strand, within SMa0412 at 223.985 kb on + strand, within SMa0412 at 224.058 kb on - strand, within SMa0412 at 224.117 kb on + strand, within SMa0412 at 224.156 kb on + strand at 224.156 kb on + strand at 224.157 kb on - strand at 224.157 kb on - strand at 224.224 kb on + strand at 224.224 kb on + strand at 224.224 kb on + strand at 224.225 kb on - strand at 224.288 kb on + strand at 224.289 kb on - strand at 224.289 kb on - strand at 224.399 kb on + strand at 224.440 kb on + strand at 224.440 kb on + strand at 224.441 kb on - strand at 224.441 kb on - strand at 224.441 kb on - strand at 224.441 kb on - strand at 224.476 kb on + strand at 224.527 kb on + strand at 224.538 kb on + strand at 224.539 kb on - strand at 224.539 kb on - strand at 224.539 kb on - strand at 224.582 kb on + strand at 224.588 kb on + strand at 224.588 kb on + strand at 224.656 kb on - strand at 224.716 kb on + strand at 224.941 kb on - strand at 225.011 kb on + strand, within SMa0414 at 225.011 kb on + strand, within SMa0414 at 225.057 kb on + strand, within SMa0414 at 225.093 kb on + strand, within SMa0414 at 225.115 kb on + strand, within SMa0414 at 225.115 kb on + strand, within SMa0414 at 225.116 kb on - strand, within SMa0414 at 225.130 kb on - strand, within SMa0414 at 225.146 kb on + strand, within SMa0414 at 225.147 kb on - strand, within SMa0414 at 225.300 kb on + strand, within SMa0414 at 225.300 kb on + strand, within SMa0414 at 225.543 kb on - strand, within SMa0414 at 225.650 kb on + strand, within SMa0414 at 225.651 kb on - strand, within SMa0414 at 225.837 kb on + strand, within SMa0414 at 225.838 kb on - strand, within SMa0414 at 225.838 kb on - strand, within SMa0414 at 225.951 kb on - strand, within SMa0414 at 226.026 kb on - strand, within SMa0414 at 226.026 kb on - strand, within SMa0414 at 226.026 kb on - strand, within SMa0414 at 226.053 kb on + strand, within SMa0414 at 226.126 kb on - strand, within SMa0414 at 226.126 kb on - strand, within SMa0414 at 226.191 kb on + strand, within SMa0414 at 226.378 kb on + strand at 226.439 kb on + strand at 226.591 kb on + strand at 227.042 kb on + strand, within SMa0417 at 227.097 kb on + strand, within SMa0417 at 227.148 kb on + strand, within SMa0417 at 227.325 kb on + strand at 227.325 kb on + strand at 227.326 kb on - strand at 227.326 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 223,810 + -0.9 223,811 - +0.7 223,862 + -0.2 223,910 + SMa0412 0.16 -1.4 223,910 + SMa0412 0.16 +0.7 223,910 + SMa0412 0.16 +0.3 223,985 + SMa0412 0.39 -0.1 224,058 - SMa0412 0.63 +0.8 224,117 + SMa0412 0.81 -0.7 224,156 + -0.3 224,156 + +1.1 224,157 - +0.0 224,157 - -0.3 224,224 + +0.2 224,224 + -0.3 224,224 + -0.0 224,225 - +0.1 224,288 + +0.3 224,289 - -0.5 224,289 - +0.7 224,399 + -0.3 224,440 + -0.3 224,440 + -0.9 224,441 - -0.8 224,441 - -0.3 224,441 - +0.2 224,441 - +1.5 224,476 + -0.4 224,527 + +1.1 224,538 + +0.4 224,539 - +0.2 224,539 - -0.1 224,539 - +0.1 224,582 + -0.1 224,588 + -0.3 224,588 + +0.7 224,656 - -1.1 224,716 + -0.1 224,941 - -0.1 225,011 + SMa0414 0.12 -0.3 225,011 + SMa0414 0.12 +0.1 225,057 + SMa0414 0.15 +1.5 225,093 + SMa0414 0.17 +0.1 225,115 + SMa0414 0.19 -0.1 225,115 + SMa0414 0.19 -0.6 225,116 - SMa0414 0.19 -0.8 225,130 - SMa0414 0.19 -0.1 225,146 + SMa0414 0.20 +0.2 225,147 - SMa0414 0.20 -0.6 225,300 + SMa0414 0.30 +0.2 225,300 + SMa0414 0.30 +2.5 225,543 - SMa0414 0.44 -0.0 225,650 + SMa0414 0.51 +0.1 225,651 - SMa0414 0.51 +0.4 225,837 + SMa0414 0.62 -0.3 225,838 - SMa0414 0.62 -0.0 225,838 - SMa0414 0.62 +1.2 225,951 - SMa0414 0.69 -0.5 226,026 - SMa0414 0.73 +0.5 226,026 - SMa0414 0.73 -1.1 226,026 - SMa0414 0.73 +0.1 226,053 + SMa0414 0.75 -0.1 226,126 - SMa0414 0.79 -0.0 226,126 - SMa0414 0.79 -0.1 226,191 + SMa0414 0.83 -0.5 226,378 + -0.1 226,439 + -2.2 226,591 + +0.3 227,042 + SMa0417 0.59 +0.0 227,097 + SMa0417 0.65 -0.3 227,148 + SMa0417 0.71 -0.9 227,325 + -0.7 227,325 + -0.1 227,326 - +0.3 227,326 - +0.1
Or see this region's nucleotide sequence