Strain Fitness in Sinorhizobium meliloti 1021 around SMa0126

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0124 and SMa0125 are separated by 47 nucleotidesSMa0125 and SMa0126 are separated by 613 nucleotidesSMa0126 and SMa0128 are separated by 120 nucleotidesSMa0128 and SMa0130 are separated by 85 nucleotides SMa0124: SMa0124 - molecular chaperone GroEL, at 66,192 to 67,826 SMa0124 SMa0125: SMa0125 - co-chaperonin GroES, at 67,874 to 68,191 SMa0125 SMa0126: SMa0126 - CspA8 Cold shock family protein, at 68,805 to 69,014 SMa0126 SMa0128: SMa0128 - hypothetical protein, at 69,135 to 69,515 SMa0128 SMa0130: SMa0130 - fatty acid desaturase, at 69,601 to 70,668 SMa0130 Position (kb) 68 69 70Strain fitness (log2 ratio) -2 -1 0 1 2at 67.809 kb on + strandat 67.809 kb on + strandat 67.810 kb on - strandat 67.810 kb on - strandat 67.853 kb on + strandat 67.854 kb on - strandat 67.946 kb on + strand, within SMa0125at 67.946 kb on + strand, within SMa0125at 67.947 kb on - strand, within SMa0125at 67.947 kb on - strand, within SMa0125at 68.029 kb on + strand, within SMa0125at 68.214 kb on + strandat 68.214 kb on + strandat 68.215 kb on - strandat 68.216 kb on + strandat 68.217 kb on - strandat 68.239 kb on - strandat 68.262 kb on - strandat 68.307 kb on + strandat 68.352 kb on + strandat 68.409 kb on - strandat 68.484 kb on - strandat 68.498 kb on + strandat 68.584 kb on + strandat 68.585 kb on - strandat 68.585 kb on - strandat 68.678 kb on + strandat 68.679 kb on - strandat 68.694 kb on - strandat 68.781 kb on + strandat 68.781 kb on + strandat 68.782 kb on - strandat 68.804 kb on + strandat 68.822 kb on + strandat 68.822 kb on + strandat 68.823 kb on - strandat 68.823 kb on - strandat 68.972 kb on + strand, within SMa0126at 68.972 kb on + strand, within SMa0126at 69.044 kb on + strandat 69.044 kb on + strandat 69.044 kb on + strandat 69.104 kb on + strandat 69.130 kb on - strandat 69.130 kb on - strandat 69.279 kb on - strand, within SMa0128at 69.513 kb on + strandat 69.513 kb on + strandat 69.513 kb on + strandat 69.597 kb on + strandat 69.598 kb on - strandat 69.600 kb on - strandat 69.616 kb on + strandat 69.616 kb on + strandat 69.617 kb on - strandat 69.617 kb on - strandat 69.617 kb on - strandat 69.676 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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67,809 + -0.1
67,809 + +0.1
67,810 - +0.0
67,810 - -1.3
67,853 + -1.7
67,854 - -0.1
67,946 + SMa0125 0.23 +0.7
67,946 + SMa0125 0.23 -0.1
67,947 - SMa0125 0.23 -0.3
67,947 - SMa0125 0.23 +0.6
68,029 + SMa0125 0.49 +0.1
68,214 + +0.0
68,214 + -1.2
68,215 - +0.1
68,216 + -0.2
68,217 - -0.6
68,239 - -0.6
68,262 - -0.7
68,307 + +2.3
68,352 + +0.2
68,409 - +0.5
68,484 - -0.2
68,498 + -2.0
68,584 + +0.2
68,585 - -0.6
68,585 - -1.7
68,678 + +0.8
68,679 - -0.3
68,694 - -0.3
68,781 + -0.2
68,781 + +1.3
68,782 - -0.9
68,804 + -0.2
68,822 + -0.3
68,822 + -0.5
68,823 - -1.3
68,823 - -1.1
68,972 + SMa0126 0.80 +1.0
68,972 + SMa0126 0.80 +0.4
69,044 + +0.6
69,044 + +0.4
69,044 + -0.4
69,104 + -0.8
69,130 - +0.2
69,130 - +0.5
69,279 - SMa0128 0.38 -0.5
69,513 + +0.5
69,513 + +0.2
69,513 + -0.4
69,597 + -0.7
69,598 - +0.4
69,600 - -0.5
69,616 + -0.5
69,616 + -0.5
69,617 - -2.5
69,617 - -0.4
69,617 - -0.7
69,676 + -0.1

Or see this region's nucleotide sequence