Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21427 and SM_b21428 are separated by 155 nucleotides SM_b21428 and SM_b21429 are separated by 24 nucleotides SM_b21429 and SM_b21430 overlap by 7 nucleotides
SM_b21427: SM_b21427 - acetyltransferase, at 1,358,626 to 1,359,114
_b21427
SM_b21428: SM_b21428 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,359,270 to 1,359,833
_b21428
SM_b21429: SM_b21429 - iron ABC transporter ATP-binding protein, at 1,359,858 to 1,360,619
_b21429
SM_b21430: SM_b21430 - iron ABC transporter permease, at 1,360,613 to 1,361,683
_b21430
Position (kb)
1359
1360
1361 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1358.875 kb on - strand, within SM_b21427 at 1358.905 kb on + strand, within SM_b21427 at 1358.906 kb on - strand, within SM_b21427 at 1358.927 kb on + strand, within SM_b21427 at 1358.927 kb on + strand, within SM_b21427 at 1358.927 kb on + strand, within SM_b21427 at 1358.928 kb on - strand, within SM_b21427 at 1358.952 kb on - strand, within SM_b21427 at 1358.952 kb on - strand, within SM_b21427 at 1358.952 kb on - strand, within SM_b21427 at 1359.196 kb on + strand at 1359.196 kb on + strand at 1359.197 kb on - strand at 1359.227 kb on + strand at 1359.227 kb on + strand at 1359.228 kb on - strand at 1359.585 kb on + strand, within SM_b21428 at 1359.585 kb on + strand, within SM_b21428 at 1359.585 kb on + strand, within SM_b21428 at 1359.585 kb on + strand, within SM_b21428 at 1359.585 kb on + strand, within SM_b21428 at 1359.586 kb on - strand, within SM_b21428 at 1359.586 kb on - strand, within SM_b21428 at 1359.586 kb on - strand, within SM_b21428 at 1359.586 kb on - strand, within SM_b21428 at 1359.938 kb on - strand, within SM_b21429 at 1360.030 kb on + strand, within SM_b21429 at 1360.030 kb on + strand, within SM_b21429 at 1360.228 kb on - strand, within SM_b21429 at 1360.358 kb on - strand, within SM_b21429 at 1360.399 kb on + strand, within SM_b21429 at 1360.399 kb on + strand, within SM_b21429 at 1360.399 kb on + strand, within SM_b21429 at 1360.400 kb on - strand, within SM_b21429 at 1360.400 kb on - strand, within SM_b21429 at 1360.400 kb on - strand, within SM_b21429 at 1360.435 kb on - strand, within SM_b21429 at 1360.440 kb on + strand, within SM_b21429 at 1360.441 kb on - strand, within SM_b21429 at 1360.582 kb on + strand at 1360.583 kb on - strand at 1360.614 kb on + strand at 1360.807 kb on + strand, within SM_b21430 at 1360.807 kb on + strand, within SM_b21430 at 1360.808 kb on - strand, within SM_b21430 at 1360.816 kb on + strand, within SM_b21430 at 1360.946 kb on - strand, within SM_b21430 at 1361.263 kb on + strand, within SM_b21430 at 1361.263 kb on + strand, within SM_b21430 at 1361.263 kb on + strand, within SM_b21430 at 1361.263 kb on + strand, within SM_b21430 at 1361.264 kb on - strand, within SM_b21430 at 1361.264 kb on - strand, within SM_b21430 at 1361.264 kb on - strand, within SM_b21430 at 1361.266 kb on - strand, within SM_b21430 at 1361.453 kb on + strand, within SM_b21430 at 1361.453 kb on + strand, within SM_b21430 at 1361.453 kb on + strand, within SM_b21430 at 1361.453 kb on + strand, within SM_b21430 at 1361.453 kb on + strand, within SM_b21430 at 1361.454 kb on - strand, within SM_b21430 at 1361.454 kb on - strand, within SM_b21430 at 1361.533 kb on - strand, within SM_b21430 at 1361.533 kb on - strand, within SM_b21430
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 1,358,875 - SM_b21427 0.51 -1.3 1,358,905 + SM_b21427 0.57 -0.5 1,358,906 - SM_b21427 0.57 -0.4 1,358,927 + SM_b21427 0.62 +0.2 1,358,927 + SM_b21427 0.62 -0.3 1,358,927 + SM_b21427 0.62 +0.1 1,358,928 - SM_b21427 0.62 -0.8 1,358,952 - SM_b21427 0.67 -0.4 1,358,952 - SM_b21427 0.67 -0.3 1,358,952 - SM_b21427 0.67 +0.4 1,359,196 + +0.5 1,359,196 + -0.6 1,359,197 - -0.4 1,359,227 + +2.2 1,359,227 + -0.1 1,359,228 - -0.5 1,359,585 + SM_b21428 0.56 -1.0 1,359,585 + SM_b21428 0.56 -1.4 1,359,585 + SM_b21428 0.56 +1.2 1,359,585 + SM_b21428 0.56 -0.3 1,359,585 + SM_b21428 0.56 +0.9 1,359,586 - SM_b21428 0.56 -0.4 1,359,586 - SM_b21428 0.56 -0.2 1,359,586 - SM_b21428 0.56 +0.9 1,359,586 - SM_b21428 0.56 -0.3 1,359,938 - SM_b21429 0.10 +1.1 1,360,030 + SM_b21429 0.23 -0.3 1,360,030 + SM_b21429 0.23 -0.2 1,360,228 - SM_b21429 0.49 -0.1 1,360,358 - SM_b21429 0.66 -0.2 1,360,399 + SM_b21429 0.71 -0.5 1,360,399 + SM_b21429 0.71 +0.5 1,360,399 + SM_b21429 0.71 +0.2 1,360,400 - SM_b21429 0.71 -1.5 1,360,400 - SM_b21429 0.71 +0.3 1,360,400 - SM_b21429 0.71 +0.4 1,360,435 - SM_b21429 0.76 +1.4 1,360,440 + SM_b21429 0.76 +0.3 1,360,441 - SM_b21429 0.77 +1.3 1,360,582 + -0.5 1,360,583 - +1.1 1,360,614 + +0.6 1,360,807 + SM_b21430 0.18 -0.2 1,360,807 + SM_b21430 0.18 +0.2 1,360,808 - SM_b21430 0.18 -0.4 1,360,816 + SM_b21430 0.19 -0.0 1,360,946 - SM_b21430 0.31 -0.6 1,361,263 + SM_b21430 0.61 +0.1 1,361,263 + SM_b21430 0.61 +0.5 1,361,263 + SM_b21430 0.61 -0.0 1,361,263 + SM_b21430 0.61 -0.3 1,361,264 - SM_b21430 0.61 +0.3 1,361,264 - SM_b21430 0.61 -0.3 1,361,264 - SM_b21430 0.61 -0.1 1,361,266 - SM_b21430 0.61 +0.1 1,361,453 + SM_b21430 0.78 -0.4 1,361,453 + SM_b21430 0.78 -2.1 1,361,453 + SM_b21430 0.78 -0.0 1,361,453 + SM_b21430 0.78 +0.8 1,361,453 + SM_b21430 0.78 -0.5 1,361,454 - SM_b21430 0.79 -0.0 1,361,454 - SM_b21430 0.79 -1.4 1,361,533 - SM_b21430 0.86 -1.2 1,361,533 - SM_b21430 0.86 -0.4
Or see this region's nucleotide sequence