Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20049

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20047 and SM_b20048 are separated by 168 nucleotidesSM_b20048 and SM_b20049 are separated by 118 nucleotidesSM_b20049 and SM_b20050 are separated by 143 nucleotidesSM_b20050 and SM_b20054 are separated by 95 nucleotides SM_b20047: SM_b20047 - hypothetical protein, at 59,127 to 59,315 _b20047 SM_b20048: SM_b20048 - transcriptional regulator, at 59,484 to 60,191 _b20048 SM_b20049: SM_b20049 - elongation factor G, at 60,310 to 62,271 _b20049 SM_b20050: SM_b20050 - hypothetical protein, at 62,415 to 62,924 _b20050 SM_b20054: SM_b20054 - non-heme chloroperoxidase, at 63,020 to 63,847 _b20054 Position (kb) 60 61 62 63Strain fitness (log2 ratio) -2 -1 0 1at 59.310 kb on + strandat 59.310 kb on + strandat 59.310 kb on + strandat 59.310 kb on + strandat 59.310 kb on + strandat 59.311 kb on - strandat 59.311 kb on - strandat 59.405 kb on + strandat 59.406 kb on - strandat 59.454 kb on + strandat 59.454 kb on + strandat 59.455 kb on - strandat 59.677 kb on - strand, within SM_b20048at 59.677 kb on - strand, within SM_b20048at 59.677 kb on - strandat 59.677 kb on - strand, within SM_b20048at 59.677 kb on - strand, within SM_b20048at 59.677 kb on - strand, within SM_b20048at 59.738 kb on - strand, within SM_b20048at 59.738 kb on - strand, within SM_b20048at 59.738 kb on - strand, within SM_b20048at 59.738 kb on - strand, within SM_b20048at 59.738 kb on - strand, within SM_b20048at 59.738 kb on - strand, within SM_b20048at 59.757 kb on + strand, within SM_b20048at 59.758 kb on - strand, within SM_b20048at 59.764 kb on - strand, within SM_b20048at 60.321 kb on + strandat 60.321 kb on + strandat 60.580 kb on + strand, within SM_b20049at 60.581 kb on - strand, within SM_b20049at 60.656 kb on + strand, within SM_b20049at 60.940 kb on + strand, within SM_b20049at 61.780 kb on + strand, within SM_b20049at 61.780 kb on + strand, within SM_b20049at 61.781 kb on - strand, within SM_b20049at 61.903 kb on + strand, within SM_b20049at 62.213 kb on - strandat 62.283 kb on + strandat 62.284 kb on - strandat 62.376 kb on + strandat 62.605 kb on + strand, within SM_b20050at 62.606 kb on - strand, within SM_b20050at 62.719 kb on - strand, within SM_b20050at 62.977 kb on - strandat 62.999 kb on - strandat 62.999 kb on - strandat 62.999 kb on - strandat 63.066 kb on + strandat 63.066 kb on + strandat 63.066 kb on + strandat 63.066 kb on + strandat 63.067 kb on - strandat 63.067 kb on - strandat 63.099 kb on + strandat 63.110 kb on + strand, within SM_b20054

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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59,310 + -0.1
59,310 + +0.9
59,310 + -0.3
59,310 + +0.1
59,310 + +0.1
59,311 - -0.5
59,311 - -1.3
59,405 + -0.3
59,406 - -0.9
59,454 + +0.5
59,454 + +0.2
59,455 - -0.1
59,677 - SM_b20048 0.27 -0.6
59,677 - SM_b20048 0.27 -0.4
59,677 - +1.7
59,677 - SM_b20048 0.27 -0.2
59,677 - SM_b20048 0.27 -0.9
59,677 - SM_b20048 0.27 +0.0
59,738 - SM_b20048 0.36 -1.3
59,738 - SM_b20048 0.36 -0.2
59,738 - SM_b20048 0.36 +0.1
59,738 - SM_b20048 0.36 +0.3
59,738 - SM_b20048 0.36 -0.5
59,738 - SM_b20048 0.36 +0.0
59,757 + SM_b20048 0.39 -0.3
59,758 - SM_b20048 0.39 -0.8
59,764 - SM_b20048 0.40 +1.4
60,321 + +0.7
60,321 + +1.2
60,580 + SM_b20049 0.14 +0.1
60,581 - SM_b20049 0.14 +0.3
60,656 + SM_b20049 0.18 -0.1
60,940 + SM_b20049 0.32 +0.5
61,780 + SM_b20049 0.75 +0.0
61,780 + SM_b20049 0.75 +0.7
61,781 - SM_b20049 0.75 +0.5
61,903 + SM_b20049 0.81 -0.1
62,213 - +0.2
62,283 + -0.6
62,284 - -2.4
62,376 + -1.0
62,605 + SM_b20050 0.37 +0.1
62,606 - SM_b20050 0.37 -0.4
62,719 - SM_b20050 0.60 +0.1
62,977 - -0.7
62,999 - -0.4
62,999 - +0.3
62,999 - -0.1
63,066 + -0.2
63,066 + -0.5
63,066 + +0.1
63,066 + +0.1
63,067 - +0.1
63,067 - -0.3
63,099 + +1.2
63,110 + SM_b20054 0.11 +0.4

Or see this region's nucleotide sequence