Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20047 and SM_b20048 are separated by 168 nucleotides SM_b20048 and SM_b20049 are separated by 118 nucleotides SM_b20049 and SM_b20050 are separated by 143 nucleotides SM_b20050 and SM_b20054 are separated by 95 nucleotides
SM_b20047: SM_b20047 - hypothetical protein, at 59,127 to 59,315
_b20047
SM_b20048: SM_b20048 - transcriptional regulator, at 59,484 to 60,191
_b20048
SM_b20049: SM_b20049 - elongation factor G, at 60,310 to 62,271
_b20049
SM_b20050: SM_b20050 - hypothetical protein, at 62,415 to 62,924
_b20050
SM_b20054: SM_b20054 - non-heme chloroperoxidase, at 63,020 to 63,847
_b20054
Position (kb)
60
61
62
63 Strain fitness (log2 ratio)
-2
-1
0
1 at 59.310 kb on + strand at 59.310 kb on + strand at 59.310 kb on + strand at 59.310 kb on + strand at 59.310 kb on + strand at 59.311 kb on - strand at 59.311 kb on - strand at 59.405 kb on + strand at 59.406 kb on - strand at 59.454 kb on + strand at 59.454 kb on + strand at 59.455 kb on - strand at 59.677 kb on - strand, within SM_b20048 at 59.677 kb on - strand, within SM_b20048 at 59.677 kb on - strand at 59.677 kb on - strand, within SM_b20048 at 59.677 kb on - strand, within SM_b20048 at 59.677 kb on - strand, within SM_b20048 at 59.738 kb on - strand, within SM_b20048 at 59.738 kb on - strand, within SM_b20048 at 59.738 kb on - strand, within SM_b20048 at 59.738 kb on - strand, within SM_b20048 at 59.738 kb on - strand, within SM_b20048 at 59.738 kb on - strand, within SM_b20048 at 59.757 kb on + strand, within SM_b20048 at 59.758 kb on - strand, within SM_b20048 at 59.764 kb on - strand, within SM_b20048 at 60.321 kb on + strand at 60.321 kb on + strand at 60.580 kb on + strand, within SM_b20049 at 60.581 kb on - strand, within SM_b20049 at 60.656 kb on + strand, within SM_b20049 at 60.940 kb on + strand, within SM_b20049 at 61.780 kb on + strand, within SM_b20049 at 61.780 kb on + strand, within SM_b20049 at 61.781 kb on - strand, within SM_b20049 at 61.903 kb on + strand, within SM_b20049 at 62.213 kb on - strand at 62.283 kb on + strand at 62.284 kb on - strand at 62.376 kb on + strand at 62.605 kb on + strand, within SM_b20050 at 62.606 kb on - strand, within SM_b20050 at 62.719 kb on - strand, within SM_b20050 at 62.977 kb on - strand at 62.999 kb on - strand at 62.999 kb on - strand at 62.999 kb on - strand at 63.066 kb on + strand at 63.066 kb on + strand at 63.066 kb on + strand at 63.066 kb on + strand at 63.067 kb on - strand at 63.067 kb on - strand at 63.099 kb on + strand at 63.110 kb on + strand, within SM_b20054
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 59,310 + -0.1 59,310 + +0.9 59,310 + -0.3 59,310 + +0.1 59,310 + +0.1 59,311 - -0.5 59,311 - -1.3 59,405 + -0.3 59,406 - -0.9 59,454 + +0.5 59,454 + +0.2 59,455 - -0.1 59,677 - SM_b20048 0.27 -0.6 59,677 - SM_b20048 0.27 -0.4 59,677 - +1.7 59,677 - SM_b20048 0.27 -0.2 59,677 - SM_b20048 0.27 -0.9 59,677 - SM_b20048 0.27 +0.0 59,738 - SM_b20048 0.36 -1.3 59,738 - SM_b20048 0.36 -0.2 59,738 - SM_b20048 0.36 +0.1 59,738 - SM_b20048 0.36 +0.3 59,738 - SM_b20048 0.36 -0.5 59,738 - SM_b20048 0.36 +0.0 59,757 + SM_b20048 0.39 -0.3 59,758 - SM_b20048 0.39 -0.8 59,764 - SM_b20048 0.40 +1.4 60,321 + +0.7 60,321 + +1.2 60,580 + SM_b20049 0.14 +0.1 60,581 - SM_b20049 0.14 +0.3 60,656 + SM_b20049 0.18 -0.1 60,940 + SM_b20049 0.32 +0.5 61,780 + SM_b20049 0.75 +0.0 61,780 + SM_b20049 0.75 +0.7 61,781 - SM_b20049 0.75 +0.5 61,903 + SM_b20049 0.81 -0.1 62,213 - +0.2 62,283 + -0.6 62,284 - -2.4 62,376 + -1.0 62,605 + SM_b20050 0.37 +0.1 62,606 - SM_b20050 0.37 -0.4 62,719 - SM_b20050 0.60 +0.1 62,977 - -0.7 62,999 - -0.4 62,999 - +0.3 62,999 - -0.1 63,066 + -0.2 63,066 + -0.5 63,066 + +0.1 63,066 + +0.1 63,067 - +0.1 63,067 - -0.3 63,099 + +1.2 63,110 + SM_b20054 0.11 +0.4
Or see this region's nucleotide sequence