Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS15745 and BBR_RS15750 are separated by 23 nucleotides BBR_RS15750 and BBR_RS15755 are separated by 50 nucleotides BBR_RS15755 and BBR_RS15760 are separated by 116 nucleotides BBR_RS15760 and BBR_RS15765 are separated by 78 nucleotides BBR_RS15765 and BBR_RS15770 are separated by 6 nucleotides
BBR_RS15745: BBR_RS15745 - hydrolase or phosphatase, at 1,303,160 to 1,303,879
_RS15745
BBR_RS15750: BBR_RS15750 - hypothetical protein, at 1,303,903 to 1,304,127
_RS15750
BBR_RS15755: BBR_RS15755 - hypothetical protein, at 1,304,178 to 1,304,585
_RS15755
BBR_RS15760: BBR_RS15760 - MerR family transcriptional regulator, at 1,304,702 to 1,305,334
_RS15760
BBR_RS15765: BBR_RS15765 - FHA domain-containing protein, at 1,305,413 to 1,305,856
_RS15765
BBR_RS15770: BBR_RS15770 - DUF881 domain-containing protein, at 1,305,863 to 1,306,684
_RS15770
Position (kb) 1304
1305
1306 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1303.741 kb on + strand, within BBR_RS15745 at 1303.749 kb on - strand, within BBR_RS15745 at 1303.830 kb on + strand at 1304.099 kb on - strand, within BBR_RS15750 at 1304.122 kb on + strand at 1304.130 kb on - strand at 1304.210 kb on + strand at 1304.269 kb on - strand, within BBR_RS15755 at 1304.320 kb on - strand, within BBR_RS15755 at 1304.501 kb on - strand, within BBR_RS15755 at 1304.581 kb on - strand at 1304.583 kb on - strand at 1304.609 kb on - strand at 1304.709 kb on + strand at 1304.839 kb on - strand, within BBR_RS15760 at 1304.879 kb on + strand, within BBR_RS15760 at 1304.950 kb on - strand, within BBR_RS15760 at 1305.003 kb on - strand, within BBR_RS15760 at 1305.045 kb on + strand, within BBR_RS15760 at 1305.053 kb on - strand, within BBR_RS15760 at 1305.293 kb on - strand at 1305.332 kb on + strand at 1305.397 kb on - strand at 1305.397 kb on - strand at 1305.420 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse1; day4 remove 1,303,741 + BBR_RS15745 0.81 -0.4 1,303,749 - BBR_RS15745 0.82 -0.9 1,303,830 + -0.2 1,304,099 - BBR_RS15750 0.87 +2.3 1,304,122 + +2.8 1,304,130 - +0.1 1,304,210 + -2.1 1,304,269 - BBR_RS15755 0.22 +0.7 1,304,320 - BBR_RS15755 0.35 -1.6 1,304,501 - BBR_RS15755 0.79 +0.5 1,304,581 - +0.6 1,304,583 - -1.0 1,304,609 - +0.9 1,304,709 + +1.3 1,304,839 - BBR_RS15760 0.22 -1.4 1,304,879 + BBR_RS15760 0.28 -1.9 1,304,950 - BBR_RS15760 0.39 -2.4 1,305,003 - BBR_RS15760 0.48 -1.6 1,305,045 + BBR_RS15760 0.54 -1.4 1,305,053 - BBR_RS15760 0.55 -0.2 1,305,293 - +0.1 1,305,332 + -1.4 1,305,397 - +0.8 1,305,397 - +2.4 1,305,420 - +1.3
Or see this region's nucleotide sequence