Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13800

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13790 and BBR_RS13795 are separated by 8 nucleotidesBBR_RS13795 and BBR_RS13800 are separated by 82 nucleotidesBBR_RS13800 and BBR_RS13805 are separated by 132 nucleotides BBR_RS13790: BBR_RS13790 - pyridoxal phosphate-dependent aminotransferase, at 866,853 to 868,064 _RS13790 BBR_RS13795: BBR_RS13795 - ABC transporter ATP-binding protein, at 868,073 to 868,858 _RS13795 BBR_RS13800: BBR_RS13800 - hypothetical protein, at 868,941 to 869,120 _RS13800 BBR_RS13805: BBR_RS13805 - hypothetical protein, at 869,253 to 871,502 _RS13805 Position (kb) 868 869 870Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 867.949 kb on - strandat 868.022 kb on + strandat 868.032 kb on + strandat 868.040 kb on - strandat 868.042 kb on + strandat 868.066 kb on - strandat 868.113 kb on - strandat 868.211 kb on + strand, within BBR_RS13795at 868.211 kb on + strand, within BBR_RS13795at 868.271 kb on + strand, within BBR_RS13795at 868.292 kb on + strand, within BBR_RS13795at 868.316 kb on + strand, within BBR_RS13795at 868.324 kb on - strand, within BBR_RS13795at 868.326 kb on - strand, within BBR_RS13795at 868.398 kb on + strand, within BBR_RS13795at 868.457 kb on + strand, within BBR_RS13795at 868.495 kb on - strand, within BBR_RS13795at 868.512 kb on - strand, within BBR_RS13795at 868.573 kb on - strand, within BBR_RS13795at 868.590 kb on + strand, within BBR_RS13795at 868.624 kb on + strand, within BBR_RS13795at 868.630 kb on + strand, within BBR_RS13795at 868.630 kb on + strand, within BBR_RS13795at 868.632 kb on - strand, within BBR_RS13795at 868.642 kb on + strand, within BBR_RS13795at 868.642 kb on + strand, within BBR_RS13795at 868.675 kb on - strand, within BBR_RS13795at 868.745 kb on - strand, within BBR_RS13795at 868.795 kb on + strandat 868.803 kb on - strandat 868.836 kb on + strandat 868.852 kb on - strandat 868.863 kb on - strandat 868.867 kb on + strandat 868.890 kb on + strandat 868.891 kb on + strandat 868.904 kb on + strandat 868.912 kb on - strandat 868.912 kb on - strandat 868.912 kb on - strandat 868.924 kb on + strandat 868.930 kb on + strandat 868.948 kb on + strandat 868.948 kb on + strandat 869.011 kb on - strand, within BBR_RS13800at 869.050 kb on + strand, within BBR_RS13800at 869.054 kb on + strand, within BBR_RS13800at 869.063 kb on - strand, within BBR_RS13800at 869.067 kb on + strand, within BBR_RS13800at 869.075 kb on - strand, within BBR_RS13800at 869.093 kb on + strand, within BBR_RS13800at 869.118 kb on - strandat 869.126 kb on + strandat 869.128 kb on + strandat 869.138 kb on - strandat 869.138 kb on - strandat 869.175 kb on - strandat 869.251 kb on + strandat 869.251 kb on + strandat 869.251 kb on + strandat 869.251 kb on + strandat 869.251 kb on + strandat 869.259 kb on - strandat 869.259 kb on - strandat 869.259 kb on - strandat 869.268 kb on - strandat 869.269 kb on - strandat 869.269 kb on - strandat 869.269 kb on - strandat 869.999 kb on - strand, within BBR_RS13805at 870.044 kb on - strand, within BBR_RS13805

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse1; day4
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867,949 - -0.2
868,022 + +0.9
868,032 + +0.5
868,040 - -0.9
868,042 + +0.7
868,066 - +0.3
868,113 - -0.9
868,211 + BBR_RS13795 0.18 -1.6
868,211 + BBR_RS13795 0.18 +1.5
868,271 + BBR_RS13795 0.25 -1.3
868,292 + BBR_RS13795 0.28 +0.1
868,316 + BBR_RS13795 0.31 -0.7
868,324 - BBR_RS13795 0.32 -1.4
868,326 - BBR_RS13795 0.32 +0.3
868,398 + BBR_RS13795 0.41 +0.3
868,457 + BBR_RS13795 0.49 -2.0
868,495 - BBR_RS13795 0.54 +0.5
868,512 - BBR_RS13795 0.56 +1.1
868,573 - BBR_RS13795 0.64 -1.4
868,590 + BBR_RS13795 0.66 +0.5
868,624 + BBR_RS13795 0.70 -1.7
868,630 + BBR_RS13795 0.71 +0.8
868,630 + BBR_RS13795 0.71 +0.3
868,632 - BBR_RS13795 0.71 +0.0
868,642 + BBR_RS13795 0.72 -0.4
868,642 + BBR_RS13795 0.72 -2.4
868,675 - BBR_RS13795 0.77 +0.6
868,745 - BBR_RS13795 0.85 -0.2
868,795 + +3.0
868,803 - -0.5
868,836 + -1.0
868,852 - -1.2
868,863 - -0.7
868,867 + -0.1
868,890 + -0.9
868,891 + -1.4
868,904 + +1.8
868,912 - -0.0
868,912 - -2.4
868,912 - -2.8
868,924 + -0.0
868,930 + +1.0
868,948 + +2.0
868,948 + -0.9
869,011 - BBR_RS13800 0.39 +0.3
869,050 + BBR_RS13800 0.61 -1.8
869,054 + BBR_RS13800 0.63 -1.4
869,063 - BBR_RS13800 0.68 -1.5
869,067 + BBR_RS13800 0.70 -1.7
869,075 - BBR_RS13800 0.74 +0.4
869,093 + BBR_RS13800 0.84 -0.6
869,118 - -1.1
869,126 + +1.1
869,128 + -0.4
869,138 - +0.9
869,138 - -1.9
869,175 - +0.9
869,251 + +0.5
869,251 + +0.6
869,251 + -0.1
869,251 + -1.3
869,251 + +1.1
869,259 - +2.1
869,259 - -0.0
869,259 - -2.7
869,268 - +0.4
869,269 - -2.4
869,269 - +1.0
869,269 - -1.2
869,999 - BBR_RS13805 0.33 -1.3
870,044 - BBR_RS13805 0.35 +0.7

Or see this region's nucleotide sequence