Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13330

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13315 and BBR_RS13320 are separated by 5 nucleotidesBBR_RS13320 and BBR_RS13325 overlap by 9 nucleotidesBBR_RS13325 and BBR_RS13330 are separated by 77 nucleotidesBBR_RS13330 and BBR_RS13335 are separated by 348 nucleotides BBR_RS13315: BBR_RS13315 - hypothetical protein, at 761,463 to 761,882 _RS13315 BBR_RS13320: BBR_RS13320 - ABC transporter ATP-binding protein, at 761,888 to 762,343 _RS13320 BBR_RS13325: BBR_RS13325 - hypothetical protein, at 762,335 to 762,637 _RS13325 BBR_RS13330: BBR_RS13330 - hypothetical protein, at 762,715 to 763,062 _RS13330 BBR_RS13335: BBR_RS13335 - transcriptional repressor, at 763,411 to 763,911 _RS13335 Position (kb) 762 763 764Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 761.745 kb on + strand, within BBR_RS13315at 761.768 kb on + strand, within BBR_RS13315at 761.791 kb on - strand, within BBR_RS13315at 761.791 kb on - strand, within BBR_RS13315at 761.791 kb on - strand, within BBR_RS13315at 761.793 kb on - strand, within BBR_RS13315at 761.793 kb on - strand, within BBR_RS13315at 761.822 kb on - strand, within BBR_RS13315at 761.839 kb on + strand, within BBR_RS13315at 761.845 kb on + strandat 761.847 kb on - strandat 761.847 kb on - strandat 761.859 kb on + strandat 761.892 kb on - strandat 761.901 kb on + strandat 762.018 kb on + strand, within BBR_RS13320at 762.036 kb on + strand, within BBR_RS13320at 762.095 kb on - strand, within BBR_RS13320at 762.168 kb on + strand, within BBR_RS13320at 762.176 kb on - strand, within BBR_RS13320at 762.180 kb on + strand, within BBR_RS13320at 762.200 kb on + strand, within BBR_RS13320at 762.202 kb on + strand, within BBR_RS13320at 762.210 kb on - strand, within BBR_RS13320at 762.210 kb on - strand, within BBR_RS13320at 762.215 kb on - strand, within BBR_RS13320at 762.273 kb on + strand, within BBR_RS13320at 762.326 kb on + strandat 762.337 kb on + strandat 762.371 kb on + strand, within BBR_RS13325at 762.371 kb on + strand, within BBR_RS13325at 762.379 kb on - strand, within BBR_RS13325at 762.398 kb on - strand, within BBR_RS13325at 762.411 kb on - strand, within BBR_RS13325at 762.412 kb on + strand, within BBR_RS13325at 762.412 kb on + strand, within BBR_RS13325at 762.420 kb on - strand, within BBR_RS13325at 762.470 kb on - strand, within BBR_RS13325at 762.475 kb on - strand, within BBR_RS13325at 762.514 kb on + strand, within BBR_RS13325at 762.671 kb on + strandat 762.672 kb on + strandat 762.680 kb on + strandat 762.726 kb on + strandat 762.731 kb on + strandat 762.739 kb on - strandat 762.760 kb on - strand, within BBR_RS13330at 762.811 kb on + strand, within BBR_RS13330at 762.821 kb on + strand, within BBR_RS13330at 762.846 kb on + strand, within BBR_RS13330at 762.851 kb on + strand, within BBR_RS13330at 762.865 kb on - strand, within BBR_RS13330at 762.872 kb on + strand, within BBR_RS13330at 762.880 kb on - strand, within BBR_RS13330at 762.907 kb on - strand, within BBR_RS13330at 762.960 kb on - strand, within BBR_RS13330at 762.974 kb on + strand, within BBR_RS13330at 763.007 kb on - strand, within BBR_RS13330at 763.049 kb on - strandat 763.105 kb on - strandat 763.105 kb on - strandat 763.222 kb on + strandat 763.234 kb on - strandat 763.236 kb on - strandat 763.236 kb on - strandat 763.236 kb on - strandat 763.321 kb on + strandat 763.334 kb on + strandat 763.394 kb on - strandat 763.403 kb on - strandat 763.403 kb on - strandat 763.405 kb on + strandat 763.444 kb on - strandat 763.450 kb on + strandat 763.457 kb on + strandat 763.482 kb on - strand, within BBR_RS13335at 763.525 kb on - strand, within BBR_RS13335at 763.559 kb on + strand, within BBR_RS13335at 763.575 kb on - strand, within BBR_RS13335at 763.576 kb on - strand, within BBR_RS13335at 763.652 kb on + strand, within BBR_RS13335at 763.659 kb on + strand, within BBR_RS13335at 763.741 kb on + strand, within BBR_RS13335at 763.741 kb on + strand, within BBR_RS13335at 763.744 kb on - strand, within BBR_RS13335at 763.749 kb on - strand, within BBR_RS13335at 763.767 kb on - strand, within BBR_RS13335at 763.793 kb on + strand, within BBR_RS13335at 763.841 kb on + strand, within BBR_RS13335at 763.844 kb on - strand, within BBR_RS13335at 763.889 kb on + strandat 763.915 kb on - strandat 763.990 kb on - strandat 764.052 kb on + strandat 764.052 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse1; day4
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761,745 + BBR_RS13315 0.67 -1.2
761,768 + BBR_RS13315 0.73 -0.5
761,791 - BBR_RS13315 0.78 -0.8
761,791 - BBR_RS13315 0.78 +1.4
761,791 - BBR_RS13315 0.78 +1.4
761,793 - BBR_RS13315 0.79 -0.9
761,793 - BBR_RS13315 0.79 +2.4
761,822 - BBR_RS13315 0.85 -2.6
761,839 + BBR_RS13315 0.90 +2.1
761,845 + +2.7
761,847 - +3.3
761,847 - -0.5
761,859 + -2.7
761,892 - -1.9
761,901 + -0.4
762,018 + BBR_RS13320 0.29 +0.4
762,036 + BBR_RS13320 0.32 +0.8
762,095 - BBR_RS13320 0.45 +0.5
762,168 + BBR_RS13320 0.61 -0.3
762,176 - BBR_RS13320 0.63 +0.2
762,180 + BBR_RS13320 0.64 +0.7
762,200 + BBR_RS13320 0.68 +2.6
762,202 + BBR_RS13320 0.69 -0.4
762,210 - BBR_RS13320 0.71 -0.1
762,210 - BBR_RS13320 0.71 +0.9
762,215 - BBR_RS13320 0.72 +1.4
762,273 + BBR_RS13320 0.84 -1.6
762,326 + -0.0
762,337 + +0.5
762,371 + BBR_RS13325 0.12 +1.6
762,371 + BBR_RS13325 0.12 +0.1
762,379 - BBR_RS13325 0.15 -1.1
762,398 - BBR_RS13325 0.21 -0.1
762,411 - BBR_RS13325 0.25 -0.9
762,412 + BBR_RS13325 0.25 -1.0
762,412 + BBR_RS13325 0.25 -2.4
762,420 - BBR_RS13325 0.28 +0.9
762,470 - BBR_RS13325 0.45 +1.0
762,475 - BBR_RS13325 0.46 +1.1
762,514 + BBR_RS13325 0.59 -0.5
762,671 + +1.7
762,672 + -1.7
762,680 + +0.5
762,726 + -0.3
762,731 + +3.2
762,739 - -0.4
762,760 - BBR_RS13330 0.13 +3.4
762,811 + BBR_RS13330 0.28 +0.3
762,821 + BBR_RS13330 0.30 -0.1
762,846 + BBR_RS13330 0.38 +0.3
762,851 + BBR_RS13330 0.39 +0.8
762,865 - BBR_RS13330 0.43 +4.9
762,872 + BBR_RS13330 0.45 +1.0
762,880 - BBR_RS13330 0.47 +0.9
762,907 - BBR_RS13330 0.55 -1.4
762,960 - BBR_RS13330 0.70 -1.4
762,974 + BBR_RS13330 0.74 -1.1
763,007 - BBR_RS13330 0.84 +1.9
763,049 - -2.8
763,105 - +1.2
763,105 - +1.4
763,222 + +0.7
763,234 - +0.7
763,236 - +0.5
763,236 - +0.6
763,236 - -1.6
763,321 + +1.5
763,334 + +2.1
763,394 - +0.1
763,403 - -0.3
763,403 - -1.7
763,405 + -0.5
763,444 - -0.7
763,450 + +0.5
763,457 + +2.7
763,482 - BBR_RS13335 0.14 +0.9
763,525 - BBR_RS13335 0.23 -1.2
763,559 + BBR_RS13335 0.30 +0.2
763,575 - BBR_RS13335 0.33 +0.7
763,576 - BBR_RS13335 0.33 -1.5
763,652 + BBR_RS13335 0.48 -0.9
763,659 + BBR_RS13335 0.50 +0.7
763,741 + BBR_RS13335 0.66 +1.5
763,741 + BBR_RS13335 0.66 +0.2
763,744 - BBR_RS13335 0.66 -0.8
763,749 - BBR_RS13335 0.67 +2.7
763,767 - BBR_RS13335 0.71 -0.8
763,793 + BBR_RS13335 0.76 -0.6
763,841 + BBR_RS13335 0.86 -0.1
763,844 - BBR_RS13335 0.86 +1.5
763,889 + -1.8
763,915 - -0.2
763,990 - -0.1
764,052 + -1.8
764,052 + +0.3

Or see this region's nucleotide sequence