Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13255

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13250 and BBR_RS13255 are separated by 234 nucleotidesBBR_RS13255 and BBR_RS13260 are separated by 102 nucleotides BBR_RS13250: BBR_RS13250 - alpha-glucosidase, at 746,467 to 748,281 _RS13250 BBR_RS13255: BBR_RS13255 - hypothetical protein, at 748,516 to 748,692 _RS13255 BBR_RS13260: BBR_RS13260 - ABC transporter substrate-binding protein, at 748,795 to 750,414 _RS13260 Position (kb) 748 749Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 747.518 kb on + strand, within BBR_RS13250at 747.531 kb on + strand, within BBR_RS13250at 747.536 kb on + strand, within BBR_RS13250at 747.541 kb on + strand, within BBR_RS13250at 747.544 kb on - strand, within BBR_RS13250at 747.606 kb on + strand, within BBR_RS13250at 747.623 kb on + strand, within BBR_RS13250at 747.631 kb on - strand, within BBR_RS13250at 747.649 kb on + strand, within BBR_RS13250at 747.657 kb on + strand, within BBR_RS13250at 747.665 kb on - strand, within BBR_RS13250at 747.737 kb on - strand, within BBR_RS13250at 747.752 kb on + strand, within BBR_RS13250at 747.825 kb on + strand, within BBR_RS13250at 747.828 kb on - strand, within BBR_RS13250at 747.845 kb on + strand, within BBR_RS13250at 747.877 kb on + strand, within BBR_RS13250at 747.880 kb on - strand, within BBR_RS13250at 747.885 kb on - strand, within BBR_RS13250at 747.896 kb on - strand, within BBR_RS13250at 747.947 kb on - strand, within BBR_RS13250at 747.966 kb on + strand, within BBR_RS13250at 747.974 kb on + strand, within BBR_RS13250at 747.974 kb on - strand, within BBR_RS13250at 747.982 kb on - strand, within BBR_RS13250at 747.996 kb on + strand, within BBR_RS13250at 748.008 kb on + strand, within BBR_RS13250at 748.016 kb on - strand, within BBR_RS13250at 748.022 kb on - strand, within BBR_RS13250at 748.058 kb on + strand, within BBR_RS13250at 748.083 kb on + strand, within BBR_RS13250at 748.086 kb on - strand, within BBR_RS13250at 748.086 kb on - strand, within BBR_RS13250at 748.091 kb on - strand, within BBR_RS13250at 748.148 kb on - strandat 748.157 kb on - strandat 748.213 kb on - strandat 748.218 kb on + strandat 748.236 kb on + strandat 748.239 kb on - strandat 748.243 kb on - strandat 748.244 kb on + strandat 748.244 kb on - strandat 748.308 kb on + strandat 748.308 kb on + strandat 748.414 kb on + strandat 748.415 kb on + strandat 748.428 kb on - strandat 748.428 kb on - strandat 748.471 kb on + strandat 748.471 kb on + strandat 748.471 kb on + strandat 748.471 kb on + strandat 748.479 kb on - strandat 748.479 kb on - strandat 748.479 kb on - strandat 748.479 kb on - strandat 748.479 kb on - strandat 748.491 kb on + strandat 748.499 kb on - strandat 748.499 kb on - strandat 748.552 kb on - strand, within BBR_RS13255at 748.573 kb on + strand, within BBR_RS13255at 748.588 kb on - strand, within BBR_RS13255at 748.618 kb on + strand, within BBR_RS13255at 748.618 kb on + strand, within BBR_RS13255at 748.618 kb on - strand, within BBR_RS13255at 748.642 kb on - strand, within BBR_RS13255at 748.654 kb on + strand, within BBR_RS13255at 748.657 kb on - strand, within BBR_RS13255at 748.662 kb on - strand, within BBR_RS13255at 748.671 kb on - strand, within BBR_RS13255at 748.834 kb on + strandat 748.842 kb on + strandat 748.897 kb on + strandat 748.946 kb on - strandat 748.953 kb on + strandat 748.981 kb on + strand, within BBR_RS13260at 748.996 kb on + strand, within BBR_RS13260at 749.013 kb on - strand, within BBR_RS13260at 749.023 kb on - strand, within BBR_RS13260at 749.023 kb on - strand, within BBR_RS13260at 749.058 kb on - strand, within BBR_RS13260at 749.078 kb on + strand, within BBR_RS13260at 749.097 kb on + strand, within BBR_RS13260at 749.115 kb on + strand, within BBR_RS13260at 749.146 kb on - strand, within BBR_RS13260at 749.146 kb on - strand, within BBR_RS13260at 749.158 kb on + strand, within BBR_RS13260at 749.158 kb on + strand, within BBR_RS13260at 749.165 kb on - strand, within BBR_RS13260at 749.181 kb on + strand, within BBR_RS13260at 749.201 kb on - strand, within BBR_RS13260at 749.244 kb on - strand, within BBR_RS13260at 749.244 kb on - strand, within BBR_RS13260at 749.276 kb on - strand, within BBR_RS13260at 749.276 kb on - strand, within BBR_RS13260at 749.320 kb on + strand, within BBR_RS13260at 749.338 kb on - strand, within BBR_RS13260at 749.421 kb on + strand, within BBR_RS13260at 749.429 kb on + strand, within BBR_RS13260at 749.441 kb on - strand, within BBR_RS13260at 749.461 kb on - strand, within BBR_RS13260at 749.514 kb on + strand, within BBR_RS13260at 749.522 kb on - strand, within BBR_RS13260at 749.536 kb on - strand, within BBR_RS13260at 749.545 kb on + strand, within BBR_RS13260at 749.545 kb on + strand, within BBR_RS13260at 749.545 kb on + strand, within BBR_RS13260at 749.545 kb on + strand, within BBR_RS13260at 749.553 kb on - strand, within BBR_RS13260at 749.555 kb on + strand, within BBR_RS13260at 749.563 kb on - strand, within BBR_RS13260at 749.569 kb on + strand, within BBR_RS13260at 749.624 kb on - strand, within BBR_RS13260at 749.634 kb on + strand, within BBR_RS13260at 749.669 kb on + strand, within BBR_RS13260at 749.677 kb on - strand, within BBR_RS13260

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse1; day4
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747,518 + BBR_RS13250 0.58 -1.2
747,531 + BBR_RS13250 0.59 +0.4
747,536 + BBR_RS13250 0.59 +0.0
747,541 + BBR_RS13250 0.59 -0.7
747,544 - BBR_RS13250 0.59 -0.6
747,606 + BBR_RS13250 0.63 -2.0
747,623 + BBR_RS13250 0.64 +1.9
747,631 - BBR_RS13250 0.64 -0.0
747,649 + BBR_RS13250 0.65 -0.3
747,657 + BBR_RS13250 0.66 -2.1
747,665 - BBR_RS13250 0.66 -0.8
747,737 - BBR_RS13250 0.70 +0.8
747,752 + BBR_RS13250 0.71 +0.9
747,825 + BBR_RS13250 0.75 -0.1
747,828 - BBR_RS13250 0.75 +1.1
747,845 + BBR_RS13250 0.76 -1.9
747,877 + BBR_RS13250 0.78 +2.9
747,880 - BBR_RS13250 0.78 +0.9
747,885 - BBR_RS13250 0.78 +0.7
747,896 - BBR_RS13250 0.79 -1.5
747,947 - BBR_RS13250 0.82 -1.3
747,966 + BBR_RS13250 0.83 +1.9
747,974 + BBR_RS13250 0.83 -1.6
747,974 - BBR_RS13250 0.83 -1.4
747,982 - BBR_RS13250 0.83 -1.6
747,996 + BBR_RS13250 0.84 +0.0
748,008 + BBR_RS13250 0.85 +2.8
748,016 - BBR_RS13250 0.85 +0.8
748,022 - BBR_RS13250 0.86 -0.8
748,058 + BBR_RS13250 0.88 +0.1
748,083 + BBR_RS13250 0.89 +0.3
748,086 - BBR_RS13250 0.89 -1.4
748,086 - BBR_RS13250 0.89 +0.5
748,091 - BBR_RS13250 0.89 +1.6
748,148 - -2.1
748,157 - +1.7
748,213 - -0.7
748,218 + -0.9
748,236 + -0.0
748,239 - -0.9
748,243 - -2.2
748,244 + +0.1
748,244 - +1.3
748,308 + +0.4
748,308 + -0.2
748,414 + +1.8
748,415 + +2.5
748,428 - +1.2
748,428 - +1.2
748,471 + +0.3
748,471 + +0.0
748,471 + +0.7
748,471 + -0.7
748,479 - -1.3
748,479 - +0.8
748,479 - +0.4
748,479 - +1.5
748,479 - +3.3
748,491 + -0.1
748,499 - -1.4
748,499 - +1.5
748,552 - BBR_RS13255 0.20 -0.7
748,573 + BBR_RS13255 0.32 +0.7
748,588 - BBR_RS13255 0.41 -0.6
748,618 + BBR_RS13255 0.58 -2.4
748,618 + BBR_RS13255 0.58 +0.4
748,618 - BBR_RS13255 0.58 +0.9
748,642 - BBR_RS13255 0.71 -0.7
748,654 + BBR_RS13255 0.78 -1.4
748,657 - BBR_RS13255 0.80 -2.2
748,662 - BBR_RS13255 0.82 +0.3
748,671 - BBR_RS13255 0.88 -1.8
748,834 + +1.6
748,842 + +1.2
748,897 + +1.3
748,946 - +3.2
748,953 + +1.1
748,981 + BBR_RS13260 0.11 +0.1
748,996 + BBR_RS13260 0.12 +0.3
749,013 - BBR_RS13260 0.13 +1.8
749,023 - BBR_RS13260 0.14 +0.9
749,023 - BBR_RS13260 0.14 +2.0
749,058 - BBR_RS13260 0.16 -0.7
749,078 + BBR_RS13260 0.17 +0.3
749,097 + BBR_RS13260 0.19 +2.3
749,115 + BBR_RS13260 0.20 +0.2
749,146 - BBR_RS13260 0.22 +0.9
749,146 - BBR_RS13260 0.22 +1.7
749,158 + BBR_RS13260 0.22 -0.3
749,158 + BBR_RS13260 0.22 -2.3
749,165 - BBR_RS13260 0.23 -2.0
749,181 + BBR_RS13260 0.24 -0.3
749,201 - BBR_RS13260 0.25 -1.0
749,244 - BBR_RS13260 0.28 +2.7
749,244 - BBR_RS13260 0.28 +2.5
749,276 - BBR_RS13260 0.30 -1.4
749,276 - BBR_RS13260 0.30 +1.2
749,320 + BBR_RS13260 0.32 -0.3
749,338 - BBR_RS13260 0.34 +0.5
749,421 + BBR_RS13260 0.39 +2.9
749,429 + BBR_RS13260 0.39 -0.5
749,441 - BBR_RS13260 0.40 -0.0
749,461 - BBR_RS13260 0.41 +1.6
749,514 + BBR_RS13260 0.44 +1.0
749,522 - BBR_RS13260 0.45 -0.3
749,536 - BBR_RS13260 0.46 +1.0
749,545 + BBR_RS13260 0.46 +2.6
749,545 + BBR_RS13260 0.46 +3.5
749,545 + BBR_RS13260 0.46 -1.3
749,545 + BBR_RS13260 0.46 +1.1
749,553 - BBR_RS13260 0.47 +0.6
749,555 + BBR_RS13260 0.47 +0.5
749,563 - BBR_RS13260 0.47 -1.4
749,569 + BBR_RS13260 0.48 +0.5
749,624 - BBR_RS13260 0.51 +0.3
749,634 + BBR_RS13260 0.52 +3.5
749,669 + BBR_RS13260 0.54 +0.9
749,677 - BBR_RS13260 0.54 -2.8

Or see this region's nucleotide sequence