Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13235

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13225 and BBR_RS13230 are separated by 66 nucleotidesBBR_RS13230 and BBR_RS13235 are separated by 274 nucleotidesBBR_RS13235 and BBR_RS13240 are separated by 260 nucleotides BBR_RS13225: BBR_RS13225 - MurR/RpiR family transcriptional regulator, at 742,166 to 743,035 _RS13225 BBR_RS13230: BBR_RS13230 - tRNA-Arg, at 743,102 to 743,178 _RS13230 BBR_RS13235: BBR_RS13235 - hypothetical protein, at 743,453 to 743,638 _RS13235 BBR_RS13240: BBR_RS13240 - sugar ABC transporter substrate-binding protein, at 743,899 to 745,230 _RS13240 Position (kb) 743 744Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 742.460 kb on + strand, within BBR_RS13225at 742.466 kb on - strand, within BBR_RS13225at 742.539 kb on - strand, within BBR_RS13225at 742.625 kb on - strand, within BBR_RS13225at 742.671 kb on - strand, within BBR_RS13225at 742.685 kb on + strand, within BBR_RS13225at 742.693 kb on - strand, within BBR_RS13225at 742.693 kb on - strand, within BBR_RS13225at 742.698 kb on - strand, within BBR_RS13225at 742.749 kb on - strand, within BBR_RS13225at 742.762 kb on + strand, within BBR_RS13225at 742.832 kb on + strand, within BBR_RS13225at 742.832 kb on + strand, within BBR_RS13225at 742.832 kb on + strand, within BBR_RS13225at 742.850 kb on + strand, within BBR_RS13225at 742.856 kb on + strand, within BBR_RS13225at 742.864 kb on - strand, within BBR_RS13225at 742.869 kb on + strand, within BBR_RS13225at 742.872 kb on - strand, within BBR_RS13225at 742.877 kb on - strand, within BBR_RS13225at 742.894 kb on - strand, within BBR_RS13225at 742.894 kb on - strand, within BBR_RS13225at 742.894 kb on - strand, within BBR_RS13225at 742.940 kb on + strand, within BBR_RS13225at 742.947 kb on - strand, within BBR_RS13225at 742.947 kb on - strand, within BBR_RS13225at 742.948 kb on - strand, within BBR_RS13225at 742.948 kb on - strand, within BBR_RS13225at 742.950 kb on - strandat 743.043 kb on + strandat 743.043 kb on + strandat 743.051 kb on - strandat 743.051 kb on - strandat 743.077 kb on + strandat 743.209 kb on + strandat 743.209 kb on + strandat 743.243 kb on + strandat 743.243 kb on + strandat 743.279 kb on - strandat 743.342 kb on - strandat 743.348 kb on - strandat 743.348 kb on - strandat 743.357 kb on + strandat 743.362 kb on + strandat 743.404 kb on + strandat 743.412 kb on - strandat 743.412 kb on - strandat 743.412 kb on - strandat 743.438 kb on + strandat 743.439 kb on + strandat 743.439 kb on + strandat 743.442 kb on - strandat 743.447 kb on - strandat 743.471 kb on - strandat 743.472 kb on - strand, within BBR_RS13235at 743.480 kb on - strand, within BBR_RS13235at 743.495 kb on - strand, within BBR_RS13235at 743.495 kb on - strand, within BBR_RS13235at 743.495 kb on - strand, within BBR_RS13235at 743.505 kb on - strand, within BBR_RS13235at 743.539 kb on - strand, within BBR_RS13235at 743.542 kb on - strand, within BBR_RS13235at 743.552 kb on - strand, within BBR_RS13235at 743.603 kb on + strand, within BBR_RS13235at 743.603 kb on + strand, within BBR_RS13235at 743.604 kb on + strand, within BBR_RS13235at 743.614 kb on - strand, within BBR_RS13235at 743.616 kb on + strand, within BBR_RS13235at 743.629 kb on + strandat 743.703 kb on - strandat 743.724 kb on + strandat 743.838 kb on - strandat 743.897 kb on + strandat 744.006 kb on - strandat 744.016 kb on - strandat 744.024 kb on - strandat 744.049 kb on - strand, within BBR_RS13240at 744.059 kb on - strand, within BBR_RS13240at 744.059 kb on - strand, within BBR_RS13240at 744.072 kb on + strand, within BBR_RS13240at 744.072 kb on + strand, within BBR_RS13240at 744.117 kb on - strand, within BBR_RS13240at 744.121 kb on + strand, within BBR_RS13240at 744.129 kb on - strand, within BBR_RS13240at 744.129 kb on - strand, within BBR_RS13240at 744.149 kb on + strand, within BBR_RS13240at 744.154 kb on + strand, within BBR_RS13240at 744.156 kb on + strand, within BBR_RS13240at 744.166 kb on + strand, within BBR_RS13240at 744.188 kb on + strand, within BBR_RS13240at 744.227 kb on - strand, within BBR_RS13240at 744.245 kb on + strand, within BBR_RS13240at 744.245 kb on + strand, within BBR_RS13240at 744.246 kb on + strand, within BBR_RS13240at 744.254 kb on - strand, within BBR_RS13240at 744.255 kb on + strand, within BBR_RS13240at 744.265 kb on - strand, within BBR_RS13240at 744.301 kb on + strand, within BBR_RS13240at 744.378 kb on - strand, within BBR_RS13240at 744.402 kb on + strand, within BBR_RS13240at 744.402 kb on + strand, within BBR_RS13240at 744.481 kb on + strand, within BBR_RS13240at 744.486 kb on + strand, within BBR_RS13240at 744.497 kb on + strand, within BBR_RS13240at 744.507 kb on + strand, within BBR_RS13240at 744.507 kb on + strand, within BBR_RS13240at 744.507 kb on + strand, within BBR_RS13240at 744.526 kb on - strand, within BBR_RS13240at 744.536 kb on - strand, within BBR_RS13240at 744.536 kb on - strand, within BBR_RS13240at 744.554 kb on + strand, within BBR_RS13240at 744.605 kb on + strand, within BBR_RS13240at 744.612 kb on + strand, within BBR_RS13240at 744.636 kb on - strand, within BBR_RS13240

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse1; day4
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742,460 + BBR_RS13225 0.34 +2.8
742,466 - BBR_RS13225 0.34 +0.3
742,539 - BBR_RS13225 0.43 -2.1
742,625 - BBR_RS13225 0.53 -1.2
742,671 - BBR_RS13225 0.58 -0.3
742,685 + BBR_RS13225 0.60 -0.6
742,693 - BBR_RS13225 0.61 -0.0
742,693 - BBR_RS13225 0.61 +1.6
742,698 - BBR_RS13225 0.61 +0.2
742,749 - BBR_RS13225 0.67 +1.3
742,762 + BBR_RS13225 0.69 +0.8
742,832 + BBR_RS13225 0.77 -0.5
742,832 + BBR_RS13225 0.77 +1.1
742,832 + BBR_RS13225 0.77 +0.9
742,850 + BBR_RS13225 0.79 +2.5
742,856 + BBR_RS13225 0.79 -0.4
742,864 - BBR_RS13225 0.80 -1.5
742,869 + BBR_RS13225 0.81 +0.3
742,872 - BBR_RS13225 0.81 -0.7
742,877 - BBR_RS13225 0.82 +0.3
742,894 - BBR_RS13225 0.84 +2.7
742,894 - BBR_RS13225 0.84 -1.3
742,894 - BBR_RS13225 0.84 +1.0
742,940 + BBR_RS13225 0.89 +1.1
742,947 - BBR_RS13225 0.90 +0.2
742,947 - BBR_RS13225 0.90 -0.7
742,948 - BBR_RS13225 0.90 +1.2
742,948 - BBR_RS13225 0.90 -0.1
742,950 - +2.9
743,043 + +0.4
743,043 + +0.2
743,051 - +0.6
743,051 - -3.1
743,077 + -2.0
743,209 + +1.3
743,209 + +3.5
743,243 + +0.0
743,243 + -0.7
743,279 - -0.5
743,342 - -1.3
743,348 - -1.0
743,348 - -1.2
743,357 + +0.2
743,362 + -0.1
743,404 + +1.7
743,412 - +0.0
743,412 - +0.5
743,412 - +0.4
743,438 + +0.9
743,439 + +0.8
743,439 + +2.5
743,442 - +0.5
743,447 - +1.7
743,471 - +2.0
743,472 - BBR_RS13235 0.10 +3.1
743,480 - BBR_RS13235 0.15 +0.9
743,495 - BBR_RS13235 0.23 +1.7
743,495 - BBR_RS13235 0.23 +1.3
743,495 - BBR_RS13235 0.23 -0.1
743,505 - BBR_RS13235 0.28 +1.2
743,539 - BBR_RS13235 0.46 +0.6
743,542 - BBR_RS13235 0.48 +2.8
743,552 - BBR_RS13235 0.53 +0.1
743,603 + BBR_RS13235 0.81 -0.2
743,603 + BBR_RS13235 0.81 +0.5
743,604 + BBR_RS13235 0.81 +1.4
743,614 - BBR_RS13235 0.87 -0.2
743,616 + BBR_RS13235 0.88 +1.4
743,629 + -1.0
743,703 - +0.7
743,724 + +0.5
743,838 - -0.8
743,897 + -0.6
744,006 - +1.7
744,016 - +2.5
744,024 - -1.8
744,049 - BBR_RS13240 0.11 +1.9
744,059 - BBR_RS13240 0.12 +1.3
744,059 - BBR_RS13240 0.12 +2.2
744,072 + BBR_RS13240 0.13 +0.8
744,072 + BBR_RS13240 0.13 -2.4
744,117 - BBR_RS13240 0.16 +0.6
744,121 + BBR_RS13240 0.17 +2.9
744,129 - BBR_RS13240 0.17 -2.9
744,129 - BBR_RS13240 0.17 -0.2
744,149 + BBR_RS13240 0.19 +1.0
744,154 + BBR_RS13240 0.19 +0.4
744,156 + BBR_RS13240 0.19 -0.5
744,166 + BBR_RS13240 0.20 -1.1
744,188 + BBR_RS13240 0.22 +1.1
744,227 - BBR_RS13240 0.25 -0.7
744,245 + BBR_RS13240 0.26 +0.6
744,245 + BBR_RS13240 0.26 +0.1
744,246 + BBR_RS13240 0.26 -0.9
744,254 - BBR_RS13240 0.27 -0.5
744,255 + BBR_RS13240 0.27 -0.1
744,265 - BBR_RS13240 0.27 -0.6
744,301 + BBR_RS13240 0.30 -2.0
744,378 - BBR_RS13240 0.36 -1.3
744,402 + BBR_RS13240 0.38 +1.2
744,402 + BBR_RS13240 0.38 +0.2
744,481 + BBR_RS13240 0.44 +0.6
744,486 + BBR_RS13240 0.44 -0.3
744,497 + BBR_RS13240 0.45 +1.3
744,507 + BBR_RS13240 0.46 +0.6
744,507 + BBR_RS13240 0.46 +1.1
744,507 + BBR_RS13240 0.46 +1.3
744,526 - BBR_RS13240 0.47 -1.4
744,536 - BBR_RS13240 0.48 -2.4
744,536 - BBR_RS13240 0.48 +0.1
744,554 + BBR_RS13240 0.49 +0.7
744,605 + BBR_RS13240 0.53 -1.5
744,612 + BBR_RS13240 0.54 +0.5
744,636 - BBR_RS13240 0.55 +0.9

Or see this region's nucleotide sequence