Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005233

Experiment: Acetylated xylan 10 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetylated xylan 10 g/L (C)
1,490,049	-		ABIE53_005232	0.56	+0.6
1,490,049	-		ABIE53_005232	0.56	-1.3
1,490,126	+		ABIE53_005232	0.61	-0.2
1,490,126	+		ABIE53_005232	0.61	-0.2
1,490,126	+		ABIE53_005232	0.61	+0.8
1,490,336	+		ABIE53_005232	0.76	+0.4
1,490,337	-		ABIE53_005232	0.76	-0.9
1,490,337	-		ABIE53_005232	0.76	-1.4
1,490,337	-		ABIE53_005232	0.76	-0.4
1,490,337	-		ABIE53_005232	0.76	+3.0
1,490,341	-		ABIE53_005232	0.76	-0.4
1,490,438	-		ABIE53_005232	0.83	-2.1
1,490,478	-		ABIE53_005232	0.86	+0.0
1,490,579	+				-2.4
1,490,742	+				-0.6
1,490,742	+				-0.6
1,490,758	+				-1.0
1,490,758	+				-2.0
1,490,826	-				-1.4
1,490,826	-				+0.4
1,490,893	+				+2.7
1,490,990	+				+0.8
1,491,048	-				+1.4
1,491,048	-				+2.4
1,491,096	+				-2.3
1,491,097	-				-2.7
1,491,097	-				-0.3
1,491,621	+		ABIE53_005233	0.41	+1.4
1,491,621	+		ABIE53_005233	0.41	-0.3
1,491,723	-		ABIE53_005233	0.48	-0.2
1,491,848	+		ABIE53_005233	0.56	-1.4
1,492,031	+		ABIE53_005233	0.68	-1.7
1,492,032	-		ABIE53_005233	0.68	+1.4
1,492,161	-		ABIE53_005233	0.76	-1.0
1,492,197	+		ABIE53_005233	0.79	-1.0
1,492,198	-		ABIE53_005233	0.79	-1.7
1,492,436	+				-0.2
1,492,439	-				-1.6
1,492,446	-				-0.9
1,492,528	-				-1.2
1,492,569	+				+0.4
1,492,572	+				-2.2
1,492,573	-				-0.2
1,492,715	+				-1.2
1,492,715	+				+0.4
1,492,716	-				+0.4
1,492,802	+		ABIE53_005234	0.12	+1.4
1,492,802	+		ABIE53_005234	0.12	-1.7
1,492,802	+		ABIE53_005234	0.12	-1.4
1,492,803	-		ABIE53_005234	0.12	+3.0
1,493,004	+		ABIE53_005234	0.27	+1.4
1,493,004	+		ABIE53_005234	0.27	+0.4
1,493,004	+		ABIE53_005234	0.27	-0.2
1,493,005	-		ABIE53_005234	0.27	-1.3
1,493,005	-		ABIE53_005234	0.27	-2.1
1,493,060	+		ABIE53_005234	0.31	+1.4
1,493,060	+		ABIE53_005234	0.31	+0.8
1,493,061	-		ABIE53_005234	0.31	-0.2
1,493,061	-		ABIE53_005234	0.31	+1.4
1,493,300	-		ABIE53_005234	0.49	+0.4
1,493,336	+		ABIE53_005234	0.52	+0.1
1,493,336	+		ABIE53_005234	0.52	+1.4
1,493,337	-		ABIE53_005234	0.52	-1.2
1,493,341	-		ABIE53_005234	0.52	+1.4
1,493,341	-		ABIE53_005234	0.52	+1.8