Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005129

Experiment: Acetylated xylan 10 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetylated xylan 10 g/L (C)
1,379,864	+		ABIE53_005128	0.25	-1.5
1,379,864	+		ABIE53_005128	0.25	-1.2
1,379,864	+		ABIE53_005128	0.25	-0.4
1,379,864	+		ABIE53_005128	0.25	-0.7
1,379,864	+		ABIE53_005128	0.25	-0.4
1,379,865	-		ABIE53_005128	0.25	+0.3
1,379,865	-		ABIE53_005128	0.25	+1.3
1,379,865	-		ABIE53_005128	0.25	-1.8
1,379,865	-		ABIE53_005128	0.25	-1.5
1,379,865	-		ABIE53_005128	0.25	-2.0
1,379,865	-		ABIE53_005128	0.25	-2.1
1,379,865	-		ABIE53_005128	0.25	+1.3
1,379,865	-		ABIE53_005128	0.25	+1.6
1,379,865	-		ABIE53_005128	0.25	-3.0
1,379,891	+		ABIE53_005128	0.28	+0.3
1,379,891	+		ABIE53_005128	0.28	-1.2
1,379,891	+		ABIE53_005128	0.28	+3.3
1,379,891	+		ABIE53_005128	0.28	+2.7
1,379,891	+		ABIE53_005128	0.28	+0.6
1,379,891	+		ABIE53_005128	0.28	+0.3
1,379,891	+		ABIE53_005128	0.28	+0.1
1,379,892	-		ABIE53_005128	0.28	+0.4
1,379,892	-		ABIE53_005128	0.28	+1.3
1,379,892	-		ABIE53_005128	0.28	-0.7
1,379,892	-		ABIE53_005128	0.28	-2.1
1,379,892	-		ABIE53_005128	0.28	-0.2
1,379,897	+		ABIE53_005128	0.28	+2.9
1,379,897	+		ABIE53_005128	0.28	+0.5
1,379,898	-		ABIE53_005128	0.28	+0.3
1,379,898	-		ABIE53_005128	0.28	-2.7
1,379,898	-		ABIE53_005128	0.28	+0.8
1,379,898	-		ABIE53_005128	0.28	-1.7
1,379,898	-		ABIE53_005128	0.28	-1.5
1,379,898	-		ABIE53_005128	0.28	-1.8
1,379,898	-		ABIE53_005128	0.28	+1.3
1,379,898	-		ABIE53_005128	0.28	+1.6
1,379,898	-		ABIE53_005128	0.28	-1.8
1,380,025	+		ABIE53_005128	0.40	-2.4
1,380,080	+		ABIE53_005128	0.46	+2.9
1,380,080	+		ABIE53_005128	0.46	+0.3
1,380,080	+		ABIE53_005128	0.46	-0.8
1,380,080	+		ABIE53_005128	0.46	-2.1
1,380,080	+		ABIE53_005128	0.46	+0.6
1,380,080	+		ABIE53_005128	0.46	-0.2
1,380,080	+		ABIE53_005128	0.46	-1.2
1,380,081	-		ABIE53_005128	0.46	-0.2
1,380,081	-		ABIE53_005128	0.46	-1.8
1,380,081	-		ABIE53_005128	0.46	-1.0
1,380,081	-		ABIE53_005128	0.46	+2.3
1,380,356	+		ABIE53_005128	0.72	+0.9
1,380,356	+		ABIE53_005128	0.72	-0.0
1,380,554	+				-1.0
1,380,554	+				-1.1
1,380,554	+				-3.2
1,380,554	+				-1.2
1,380,554	+				-1.0
1,380,555	-				-2.5
1,380,555	-				+2.7
1,380,555	-				-0.5
1,380,555	-				-0.7
1,380,555	-				-1.1
1,380,555	-				-2.8
1,380,555	-				+0.9
1,380,610	+				-2.7
1,380,629	+				+1.3
1,380,629	+				-1.5
1,380,629	+				-0.1
1,380,629	+				-1.6
1,380,629	+				+0.3
1,380,630	-				+1.3
1,380,630	-				-1.0
1,380,664	+				-0.5
1,380,665	-				-1.1
1,380,665	-				-0.9
1,380,665	-				-0.2
1,380,694	+				+1.2
1,380,695	-				+1.3
1,380,695	-				-1.5
1,380,695	-				-1.2
1,381,467	+		ABIE53_005129	0.57	+0.0
1,381,468	-		ABIE53_005129	0.57	+0.2
1,381,635	+		ABIE53_005129	0.69	-1.2
1,381,691	-		ABIE53_005129	0.73	-0.1
1,381,836	-		ABIE53_005129	0.84	-0.7
1,381,836	-		ABIE53_005129	0.84	+0.2
1,381,837	+		ABIE53_005129	0.84	+0.7
1,381,837	+		ABIE53_005129	0.84	+0.1
1,381,837	+		ABIE53_005129	0.84	-1.5
1,381,838	-		ABIE53_005129	0.84	-0.4
1,381,838	-		ABIE53_005129	0.84	+0.2
1,381,838	-		ABIE53_005129	0.84	-0.1
1,381,838	-		ABIE53_005129	0.84	+0.3
1,381,909	+		ABIE53_005129	0.89	-2.0
1,381,909	+		ABIE53_005129	0.89	-0.2
1,381,910	-		ABIE53_005129	0.89	+0.8
1,382,133	-				+1.9
1,382,133	-				-1.6
1,382,133	-				-1.4
1,382,133	-				-1.5
1,382,153	+				+1.3
1,382,256	-				-1.8
1,382,265	+				-0.7
1,382,305	+				+0.3
1,382,305	+				+0.3
1,382,306	-				+1.3
1,382,313	-				-1.8
1,382,336	+				-2.7
1,382,337	-				+1.3
1,382,391	+				-1.4
1,382,391	+				-2.7
1,382,522	+				-0.7
1,382,684	+				+1.3
1,382,685	-				-1.5
1,382,754	+				-1.5
1,382,754	+				-1.2
1,382,755	-				+1.3
1,382,755	-				-1.4
1,382,755	-				+0.8
1,382,764	+				+0.3
1,382,765	-				-1.8
1,382,765	-				+1.3
1,382,765	-				-0.5
1,382,765	-				+1.5
1,382,765	-				-0.2
1,382,777	-				-2.2
1,382,843	+				-1.0
1,382,844	-				-1.8
1,382,896	-				+1.3
1,382,938	+				+0.6
1,382,939	-				-1.8
1,382,939	-				-0.7
1,382,939	-				+0.3
1,382,939	-				-1.0
1,382,939	-				-0.7
1,382,939	-				+0.0
1,383,052	+				+0.9
1,383,052	+				+1.3
1,383,053	-				-2.8