Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002960

Experiment: Acetylated xylan 10 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetylated xylan 10 g/L (C)
3,347,547	-		ABIE53_002959	0.22	+1.3
3,347,597	+		ABIE53_002959	0.32	-0.3
3,347,598	-		ABIE53_002959	0.32	-2.0
3,347,633	+		ABIE53_002959	0.39	-0.3
3,347,633	+		ABIE53_002959	0.39	-0.3
3,347,634	-		ABIE53_002959	0.39	-2.5
3,347,634	-		ABIE53_002959	0.39	-3.3
3,347,798	+		ABIE53_002959	0.70	+3.6
3,347,799	-		ABIE53_002959	0.70	-0.5
3,347,847	-		ABIE53_002959	0.79	-2.4
3,347,948	+				+2.9
3,348,047	+				-1.3
3,348,047	+				-1.7
3,348,048	-				+1.3
3,348,048	-				-4.7
3,348,196	+				-3.0
3,348,196	+				+0.3
3,348,196	+				+1.3
3,348,197	-				+2.3
3,348,197	-				-2.3
3,348,197	-				-1.2
3,348,197	-				-2.3
3,348,197	-				+0.3
3,348,210	+				-3.8
3,348,211	-				-1.9
3,348,211	-				-1.0
3,348,250	+				-1.3
3,348,250	+				-0.1
3,348,250	+				+2.9
3,348,250	+				-2.0
3,348,250	+				+1.3
3,348,250	+				+0.3
3,348,251	-				-0.9
3,348,251	-				-0.7
3,348,251	-				-0.3
3,348,251	-				-0.7
3,348,251	-				-4.6
3,348,268	+				+1.3
3,348,268	+				-2.2
3,348,268	+				-1.0
3,348,268	+				-2.7
3,348,268	+				+0.7
3,348,268	+				+0.4
3,348,268	+				+0.5
3,348,268	+				+0.3
3,348,268	+				+1.3
3,348,268	+				+1.3
3,348,268	+				+2.3
3,348,268	+				+0.8
3,348,268	+				-0.5
3,348,268	+				-1.3
3,348,268	+				-4.1
3,348,268	+				-1.9
3,348,268	+				-0.3
3,348,268	+				+1.3
3,348,268	+				-0.3
3,348,268	+				-1.3
3,348,268	+				-1.0
3,348,269	-				+1.3
3,348,269	-				-0.7
3,348,269	-				+0.3
3,348,269	-				+1.3
3,348,269	-				-1.2
3,348,269	-				-2.9
3,348,269	-				-1.8
3,348,269	-				-2.0
3,348,269	-				-1.4
3,348,269	-				-1.3
3,348,269	-				+0.9
3,348,269	-				+1.3
3,348,323	-				-2.3
3,348,323	-				-0.3
3,348,323	-				-2.5
3,348,323	-				-0.0
3,348,323	-				+0.3
3,348,323	-				-1.0
3,348,323	-				-1.5
3,348,323	-				-1.2
3,348,323	-				+0.3
3,348,323	-				+2.9
3,348,323	-				-0.4
3,348,323	-				-0.1
3,348,323	-				-0.0
3,348,472	-				-0.6
3,348,472	-				-0.2
3,348,472	-				+1.3
3,348,483	-				-1.5
3,348,483	-				+1.3
3,348,483	-				-0.5
3,348,576	+		ABIE53_002960	0.10	+2.3
3,348,576	+		ABIE53_002960	0.10	-2.0
3,348,577	-		ABIE53_002960	0.10	+0.7
3,348,577	-		ABIE53_002960	0.10	+0.5
3,348,994	+		ABIE53_002960	0.51	-1.1
3,348,994	+		ABIE53_002960	0.51	-0.7
3,348,994	+		ABIE53_002960	0.51	+1.3
3,348,994	+		ABIE53_002960	0.51	+1.9
3,348,994	+		ABIE53_002960	0.51	-1.6
3,348,995	-		ABIE53_002960	0.51	-0.4
3,348,995	-		ABIE53_002960	0.51	-1.1
3,349,056	+		ABIE53_002960	0.57	-1.0
3,349,057	-		ABIE53_002960	0.57	+2.3
3,349,057	-		ABIE53_002960	0.57	+0.3
3,349,057	-		ABIE53_002960	0.57	+1.3
3,349,057	-		ABIE53_002960	0.57	-0.6
3,349,275	+		ABIE53_002960	0.78	+0.9
3,349,275	+		ABIE53_002960	0.78	-0.1
3,349,275	+		ABIE53_002960	0.78	+1.7
3,349,276	-		ABIE53_002960	0.78	+0.3
3,349,276	-		ABIE53_002960	0.78	-1.7
3,349,276	-		ABIE53_002960	0.78	+0.1
3,349,476	+				+1.3
3,349,476	+				+1.5
3,349,476	+				+3.3
3,349,476	+				-2.9
3,349,476	+				-0.0
3,349,476	+				-1.4
3,349,477	-				-2.9
3,349,477	-				-0.3
3,349,477	-				-0.7
3,349,477	-				-0.5
3,349,477	-				-1.7
3,349,477	-				-0.6
3,349,556	+				-0.8
3,349,557	-				+1.7
3,349,582	-				+0.3
3,349,582	-				-1.7
3,349,643	-				-1.3
3,349,708	+				-1.3
3,349,987	+		ABIE53_002961	0.13	+0.7
3,349,987	+		ABIE53_002961	0.13	+1.1
3,349,987	+		ABIE53_002961	0.13	-0.3
3,349,987	+		ABIE53_002961	0.13	-2.6
3,349,988	-		ABIE53_002961	0.13	+1.3
3,350,002	+		ABIE53_002961	0.14	-0.4
3,350,167	+		ABIE53_002961	0.27	+0.1
3,350,167	+		ABIE53_002961	0.27	-2.2
3,350,167	+		ABIE53_002961	0.27	+0.3
3,350,167	+		ABIE53_002961	0.27	+0.7
3,350,167	+		ABIE53_002961	0.27	-1.5
3,350,167	+		ABIE53_002961	0.27	+1.3
3,350,167	+		ABIE53_002961	0.27	+0.5
3,350,168	-		ABIE53_002961	0.27	+0.3
3,350,168	-		ABIE53_002961	0.27	+1.0
3,350,168	-		ABIE53_002961	0.27	-0.6
3,350,168	-		ABIE53_002961	0.27	+0.3
3,350,168	-		ABIE53_002961	0.27	-1.3
3,350,168	-		ABIE53_002961	0.27	-1.2
3,350,168	-		ABIE53_002961	0.27	-0.7
3,350,168	-		ABIE53_002961	0.27	+1.3
3,350,168	-		ABIE53_002961	0.27	+1.3
3,350,168	-		ABIE53_002961	0.27	-1.0
3,350,168	-		ABIE53_002961	0.27	+1.3
3,350,168	-		ABIE53_002961	0.27	+0.5
3,350,168	-		ABIE53_002961	0.27	+0.3
3,350,168	-		ABIE53_002961	0.27	+1.3
3,350,168	-		ABIE53_002961	0.27	+0.9
3,350,168	-		ABIE53_002961	0.27	+1.5
3,350,168	-		ABIE53_002961	0.27	-1.3
3,350,168	-		ABIE53_002961	0.27	+1.9
3,350,335	+		ABIE53_002961	0.39	-0.6
3,350,336	-		ABIE53_002961	0.39	-1.2
3,350,336	-		ABIE53_002961	0.39	-3.6
3,350,336	-		ABIE53_002961	0.39	+1.3
3,350,336	-		ABIE53_002961	0.39	-0.5
3,350,356	+		ABIE53_002961	0.41	-0.3
3,350,356	+		ABIE53_002961	0.41	+0.6
3,350,356	+		ABIE53_002961	0.41	+1.3
3,350,357	-		ABIE53_002961	0.41	-2.5
3,350,357	-		ABIE53_002961	0.41	-0.5