Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001936

Experiment: Acetylated xylan 10 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetylated xylan 10 g/L (C)
2,187,471	+		ABIE53_001935	0.39	+1.5
2,187,472	-		ABIE53_001935	0.39	+0.7
2,187,472	-		ABIE53_001935	0.39	+2.5
2,187,472	-		ABIE53_001935	0.39	+1.5
2,187,487	+		ABIE53_001935	0.40	+1.5
2,187,487	+		ABIE53_001935	0.40	-3.2
2,187,487	+		ABIE53_001935	0.40	-1.7
2,187,488	-		ABIE53_001935	0.40	+1.0
2,187,610	+		ABIE53_001935	0.49	+1.5
2,187,677	-		ABIE53_001935	0.54	+0.5
2,187,871	+		ABIE53_001935	0.69	+1.5
2,187,871	+		ABIE53_001935	0.69	-1.8
2,187,871	+		ABIE53_001935	0.69	-0.9
2,187,872	-		ABIE53_001935	0.69	+1.5
2,187,872	-		ABIE53_001935	0.69	-0.1
2,187,910	+		ABIE53_001935	0.72	+1.5
2,187,911	-		ABIE53_001935	0.72	+0.5
2,187,911	-		ABIE53_001935	0.72	+0.5
2,187,929	+		ABIE53_001935	0.74	+0.5
2,188,077	+		ABIE53_001935	0.85	+0.5
2,188,077	+		ABIE53_001935	0.85	-2.2
2,188,077	+		ABIE53_001935	0.85	-0.9
2,188,078	-		ABIE53_001935	0.85	+1.5
2,188,078	-		ABIE53_001935	0.85	+1.5
2,188,078	-		ABIE53_001935	0.85	+2.3
2,188,141	+		ABIE53_001935	0.90	-1.9
2,188,141	+		ABIE53_001935	0.90	+1.5
2,188,142	-		ABIE53_001935	0.90	+1.0
2,188,204	+				-0.9
2,188,205	-				-1.1
2,188,205	-				-0.5
2,188,205	-				+0.5
2,188,205	-				+1.5
2,188,205	-				-0.1
2,188,228	+				-0.6
2,188,228	+				+3.1
2,188,228	+				+0.5
2,188,229	-				+0.5
2,188,252	+				-0.1
2,188,314	+				-0.1
2,188,315	-				+0.0
2,188,316	+				-0.6
2,188,316	+				-0.4
2,188,317	-				-2.0
2,188,317	-				-1.1
2,188,317	-				+0.5
2,188,341	+				-0.9
2,188,341	+				-0.4
2,188,342	-				+2.8
2,188,342	-				-1.1
2,188,342	-				+0.5
2,188,342	-				-0.1
2,188,342	-				-1.1
2,188,342	-				-0.5
2,188,342	-				-0.5
2,188,342	-				-1.3
2,188,342	-				-0.3
2,188,342	-				+1.5
2,188,622	-		ABIE53_001936	0.33	+0.5
2,188,877	-		ABIE53_001936	0.62	-2.5
2,188,877	-		ABIE53_001936	0.62	+0.5
2,189,005	+		ABIE53_001936	0.77	-0.8
2,189,006	-		ABIE53_001936	0.77	-0.2
2,189,006	-		ABIE53_001936	0.77	-0.1
2,189,280	+				-1.3
2,189,280	+				+0.5
2,189,280	+				+0.5
2,189,281	-				-1.2
2,189,281	-				-0.5
2,189,281	-				-2.2
2,189,281	-				+1.5
2,189,293	-				+1.5
2,189,293	-				-0.9
2,189,293	-				-2.8
2,189,317	+				-2.5
2,189,318	-				+1.5
2,189,381	+				+1.5
2,189,469	+		ABIE53_001937	0.18	+1.5
2,189,807	-		ABIE53_001937	0.51	-0.7
2,189,807	-		ABIE53_001937	0.51	-1.0
2,189,853	+		ABIE53_001937	0.56	-0.1
2,189,854	-		ABIE53_001937	0.56	-2.0
2,189,854	-		ABIE53_001937	0.56	-0.9
2,189,854	-		ABIE53_001937	0.56	+1.5
2,189,949	+		ABIE53_001937	0.65	-1.7
2,189,964	+		ABIE53_001937	0.66	-0.5
2,189,965	-		ABIE53_001937	0.67	+0.5
2,189,965	-		ABIE53_001937	0.67	+1.5
2,189,965	-		ABIE53_001937	0.67	+1.5
2,190,052	+		ABIE53_001937	0.75	+1.2
2,190,053	-		ABIE53_001937	0.75	+1.5
2,190,053	-		ABIE53_001937	0.75	+1.5
2,190,104	-		ABIE53_001937	0.80	+2.5
2,190,202	+		ABIE53_001937	0.90	-0.5