Experiment: Acetylated xylan 10 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000626 and ABIE53_000627 are separated by 13 nucleotides ABIE53_000627 and ABIE53_000628 are separated by 17 nucleotides ABIE53_000628 and ABIE53_000629 are separated by 25 nucleotides
ABIE53_000626: ABIE53_000626 - D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6), at 684,369 to 685,598
_000626
ABIE53_000627: ABIE53_000627 - D-alanine transaminase, at 685,612 to 686,517
_000627
ABIE53_000628: ABIE53_000628 - putative lipoic acid-binding regulatory protein, at 686,535 to 686,804
_000628
ABIE53_000629: ABIE53_000629 - LysR family glycine cleavage system transcriptional activator, at 686,830 to 687,846
_000629
Position (kb) 686
687 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 685.596 kb on + strand at 685.596 kb on + strand at 685.597 kb on - strand at 685.651 kb on + strand at 685.651 kb on + strand at 685.651 kb on + strand at 685.651 kb on + strand at 685.651 kb on + strand at 685.651 kb on + strand at 685.651 kb on + strand at 685.652 kb on - strand at 685.713 kb on + strand, within ABIE53_000627 at 685.714 kb on - strand, within ABIE53_000627 at 685.732 kb on + strand, within ABIE53_000627 at 685.732 kb on + strand, within ABIE53_000627 at 685.732 kb on + strand, within ABIE53_000627 at 685.732 kb on + strand, within ABIE53_000627 at 685.732 kb on + strand, within ABIE53_000627 at 685.732 kb on + strand, within ABIE53_000627 at 685.733 kb on - strand, within ABIE53_000627 at 685.733 kb on - strand, within ABIE53_000627 at 685.733 kb on - strand, within ABIE53_000627 at 685.750 kb on + strand, within ABIE53_000627 at 685.750 kb on + strand, within ABIE53_000627 at 685.750 kb on + strand, within ABIE53_000627 at 685.750 kb on + strand, within ABIE53_000627 at 685.750 kb on + strand, within ABIE53_000627 at 685.750 kb on + strand, within ABIE53_000627 at 685.750 kb on + strand, within ABIE53_000627 at 685.751 kb on - strand, within ABIE53_000627 at 685.751 kb on - strand, within ABIE53_000627 at 685.751 kb on - strand, within ABIE53_000627 at 685.936 kb on + strand, within ABIE53_000627 at 685.936 kb on + strand, within ABIE53_000627 at 685.936 kb on + strand, within ABIE53_000627 at 685.936 kb on + strand, within ABIE53_000627 at 685.936 kb on + strand, within ABIE53_000627 at 685.936 kb on + strand, within ABIE53_000627 at 685.937 kb on - strand, within ABIE53_000627 at 685.937 kb on - strand, within ABIE53_000627 at 685.937 kb on - strand, within ABIE53_000627 at 686.146 kb on + strand, within ABIE53_000627 at 686.146 kb on + strand, within ABIE53_000627 at 686.146 kb on + strand, within ABIE53_000627 at 686.146 kb on + strand, within ABIE53_000627 at 686.146 kb on + strand, within ABIE53_000627 at 686.147 kb on - strand, within ABIE53_000627 at 686.147 kb on - strand, within ABIE53_000627 at 686.147 kb on - strand, within ABIE53_000627 at 686.147 kb on - strand, within ABIE53_000627 at 686.479 kb on + strand at 686.479 kb on + strand at 686.479 kb on + strand at 686.479 kb on + strand at 686.480 kb on - strand at 686.480 kb on - strand at 686.488 kb on + strand at 686.488 kb on + strand at 686.489 kb on - strand at 686.489 kb on - strand at 686.558 kb on + strand at 686.558 kb on + strand at 686.558 kb on + strand at 686.558 kb on + strand at 686.558 kb on + strand at 686.558 kb on + strand at 686.558 kb on + strand at 686.558 kb on + strand at 686.558 kb on + strand at 686.559 kb on - strand at 686.559 kb on - strand at 686.559 kb on - strand at 686.559 kb on - strand at 686.559 kb on - strand at 686.559 kb on - strand at 686.565 kb on + strand, within ABIE53_000628 at 686.566 kb on - strand, within ABIE53_000628 at 686.566 kb on - strand, within ABIE53_000628 at 686.597 kb on + strand, within ABIE53_000628 at 686.597 kb on + strand, within ABIE53_000628 at 686.597 kb on + strand, within ABIE53_000628 at 686.597 kb on + strand, within ABIE53_000628 at 686.597 kb on + strand, within ABIE53_000628 at 686.598 kb on - strand, within ABIE53_000628 at 686.703 kb on + strand, within ABIE53_000628 at 686.703 kb on + strand, within ABIE53_000628 at 686.703 kb on + strand, within ABIE53_000628 at 686.703 kb on + strand, within ABIE53_000628 at 686.704 kb on - strand, within ABIE53_000628 at 686.704 kb on - strand, within ABIE53_000628 at 686.704 kb on - strand, within ABIE53_000628 at 686.704 kb on - strand, within ABIE53_000628 at 686.704 kb on - strand, within ABIE53_000628 at 686.704 kb on - strand, within ABIE53_000628 at 686.704 kb on - strand, within ABIE53_000628 at 686.704 kb on - strand, within ABIE53_000628 at 686.704 kb on - strand, within ABIE53_000628 at 686.704 kb on - strand, within ABIE53_000628 at 686.760 kb on + strand, within ABIE53_000628 at 686.760 kb on + strand, within ABIE53_000628 at 686.761 kb on - strand, within ABIE53_000628 at 686.802 kb on + strand at 686.802 kb on + strand at 686.802 kb on + strand at 686.802 kb on + strand at 686.802 kb on + strand at 686.802 kb on + strand at 686.803 kb on - strand at 686.803 kb on - strand at 686.803 kb on - strand at 686.832 kb on - strand at 687.044 kb on + strand, within ABIE53_000629 at 687.044 kb on + strand, within ABIE53_000629 at 687.044 kb on + strand, within ABIE53_000629 at 687.044 kb on + strand, within ABIE53_000629 at 687.044 kb on + strand, within ABIE53_000629 at 687.044 kb on + strand, within ABIE53_000629 at 687.044 kb on + strand, within ABIE53_000629 at 687.044 kb on + strand, within ABIE53_000629 at 687.045 kb on - strand, within ABIE53_000629 at 687.045 kb on - strand, within ABIE53_000629 at 687.045 kb on - strand, within ABIE53_000629 at 687.045 kb on - strand, within ABIE53_000629 at 687.045 kb on - strand, within ABIE53_000629 at 687.045 kb on - strand, within ABIE53_000629 at 687.045 kb on - strand, within ABIE53_000629 at 687.047 kb on + strand, within ABIE53_000629 at 687.047 kb on + strand, within ABIE53_000629 at 687.047 kb on + strand, within ABIE53_000629 at 687.047 kb on + strand, within ABIE53_000629 at 687.047 kb on + strand, within ABIE53_000629 at 687.047 kb on + strand, within ABIE53_000629 at 687.047 kb on + strand, within ABIE53_000629 at 687.047 kb on + strand, within ABIE53_000629 at 687.048 kb on - strand, within ABIE53_000629 at 687.048 kb on - strand, within ABIE53_000629 at 687.048 kb on - strand, within ABIE53_000629 at 687.048 kb on - strand, within ABIE53_000629 at 687.048 kb on - strand, within ABIE53_000629 at 687.188 kb on + strand, within ABIE53_000629 at 687.188 kb on + strand, within ABIE53_000629 at 687.188 kb on + strand, within ABIE53_000629 at 687.189 kb on - strand, within ABIE53_000629 at 687.189 kb on - strand, within ABIE53_000629 at 687.189 kb on - strand, within ABIE53_000629 at 687.377 kb on + strand, within ABIE53_000629 at 687.377 kb on + strand, within ABIE53_000629 at 687.378 kb on - strand, within ABIE53_000629 at 687.389 kb on + strand, within ABIE53_000629 at 687.389 kb on + strand, within ABIE53_000629 at 687.389 kb on + strand, within ABIE53_000629 at 687.389 kb on + strand, within ABIE53_000629 at 687.389 kb on + strand, within ABIE53_000629 at 687.389 kb on + strand, within ABIE53_000629 at 687.390 kb on - strand, within ABIE53_000629 at 687.390 kb on - strand, within ABIE53_000629 at 687.390 kb on - strand, within ABIE53_000629 at 687.390 kb on - strand, within ABIE53_000629 at 687.390 kb on - strand, within ABIE53_000629 at 687.390 kb on - strand, within ABIE53_000629 at 687.398 kb on + strand, within ABIE53_000629 at 687.496 kb on - strand, within ABIE53_000629
Per-strain Table
Position Strand Gene LocusTag Fraction Acetylated xylan 10 g/L (C) remove 685,596 + +2.0 685,596 + -1.7 685,597 - -0.6 685,651 + -1.2 685,651 + -0.6 685,651 + +2.0 685,651 + -2.6 685,651 + -1.1 685,651 + +1.4 685,651 + -0.6 685,652 - +0.4 685,713 + ABIE53_000627 0.11 -0.3 685,714 - ABIE53_000627 0.11 -1.3 685,732 + ABIE53_000627 0.13 +0.7 685,732 + ABIE53_000627 0.13 +2.6 685,732 + ABIE53_000627 0.13 -0.5 685,732 + ABIE53_000627 0.13 +0.1 685,732 + ABIE53_000627 0.13 -0.4 685,732 + ABIE53_000627 0.13 -1.2 685,733 - ABIE53_000627 0.13 -2.9 685,733 - ABIE53_000627 0.13 +1.8 685,733 - ABIE53_000627 0.13 -0.6 685,750 + ABIE53_000627 0.15 -1.0 685,750 + ABIE53_000627 0.15 -3.2 685,750 + ABIE53_000627 0.15 -0.9 685,750 + ABIE53_000627 0.15 -0.3 685,750 + ABIE53_000627 0.15 +0.7 685,750 + ABIE53_000627 0.15 +0.4 685,750 + ABIE53_000627 0.15 -1.3 685,751 - ABIE53_000627 0.15 -3.2 685,751 - ABIE53_000627 0.15 -0.0 685,751 - ABIE53_000627 0.15 +1.0 685,936 + ABIE53_000627 0.36 -1.2 685,936 + ABIE53_000627 0.36 -1.1 685,936 + ABIE53_000627 0.36 -1.0 685,936 + ABIE53_000627 0.36 +1.2 685,936 + ABIE53_000627 0.36 -2.0 685,936 + ABIE53_000627 0.36 +0.4 685,937 - ABIE53_000627 0.36 +2.3 685,937 - ABIE53_000627 0.36 -1.8 685,937 - ABIE53_000627 0.36 +1.6 686,146 + ABIE53_000627 0.59 +0.8 686,146 + ABIE53_000627 0.59 -0.7 686,146 + ABIE53_000627 0.59 -1.4 686,146 + ABIE53_000627 0.59 -1.3 686,146 + ABIE53_000627 0.59 -0.9 686,147 - ABIE53_000627 0.59 -0.3 686,147 - ABIE53_000627 0.59 +0.3 686,147 - ABIE53_000627 0.59 -1.5 686,147 - ABIE53_000627 0.59 -1.0 686,479 + -2.0 686,479 + -2.0 686,479 + +0.4 686,479 + +0.5 686,480 - -2.3 686,480 - +3.0 686,488 + +0.2 686,488 + -3.5 686,489 - -1.3 686,489 - -1.8 686,558 + -0.0 686,558 + +1.2 686,558 + +1.3 686,558 + -0.0 686,558 + +1.5 686,558 + +0.0 686,558 + -0.6 686,558 + -0.6 686,558 + -0.3 686,559 - +0.6 686,559 - +1.0 686,559 - +0.7 686,559 - -2.2 686,559 - -3.7 686,559 - -0.4 686,565 + ABIE53_000628 0.11 -1.0 686,566 - ABIE53_000628 0.11 -0.0 686,566 - ABIE53_000628 0.11 -2.2 686,597 + ABIE53_000628 0.23 +1.6 686,597 + ABIE53_000628 0.23 -3.3 686,597 + ABIE53_000628 0.23 +0.8 686,597 + ABIE53_000628 0.23 -0.3 686,597 + ABIE53_000628 0.23 +2.0 686,598 - ABIE53_000628 0.23 -0.0 686,703 + ABIE53_000628 0.62 -2.8 686,703 + ABIE53_000628 0.62 +1.3 686,703 + ABIE53_000628 0.62 +0.7 686,703 + ABIE53_000628 0.62 +0.4 686,704 - ABIE53_000628 0.63 -1.3 686,704 - ABIE53_000628 0.63 -2.3 686,704 - ABIE53_000628 0.63 +0.3 686,704 - ABIE53_000628 0.63 -1.0 686,704 - ABIE53_000628 0.63 -1.7 686,704 - ABIE53_000628 0.63 +1.0 686,704 - ABIE53_000628 0.63 +1.0 686,704 - ABIE53_000628 0.63 -0.3 686,704 - ABIE53_000628 0.63 +1.6 686,704 - ABIE53_000628 0.63 +0.1 686,760 + ABIE53_000628 0.83 -0.6 686,760 + ABIE53_000628 0.83 -0.3 686,761 - ABIE53_000628 0.84 +1.0 686,802 + +2.0 686,802 + -0.5 686,802 + -0.5 686,802 + -1.9 686,802 + -1.4 686,802 + +0.5 686,803 - -2.4 686,803 - +1.0 686,803 - +2.0 686,832 - -1.0 687,044 + ABIE53_000629 0.21 -1.6 687,044 + ABIE53_000629 0.21 -2.2 687,044 + ABIE53_000629 0.21 -1.6 687,044 + ABIE53_000629 0.21 +1.0 687,044 + ABIE53_000629 0.21 +1.6 687,044 + ABIE53_000629 0.21 -0.4 687,044 + ABIE53_000629 0.21 +3.0 687,044 + ABIE53_000629 0.21 -1.0 687,045 - ABIE53_000629 0.21 -0.6 687,045 - ABIE53_000629 0.21 -0.4 687,045 - ABIE53_000629 0.21 -0.6 687,045 - ABIE53_000629 0.21 -1.4 687,045 - ABIE53_000629 0.21 +2.6 687,045 - ABIE53_000629 0.21 -0.9 687,045 - ABIE53_000629 0.21 -0.5 687,047 + ABIE53_000629 0.21 +1.0 687,047 + ABIE53_000629 0.21 -1.2 687,047 + ABIE53_000629 0.21 -3.4 687,047 + ABIE53_000629 0.21 -1.6 687,047 + ABIE53_000629 0.21 +3.0 687,047 + ABIE53_000629 0.21 +1.6 687,047 + ABIE53_000629 0.21 -2.2 687,047 + ABIE53_000629 0.21 -2.0 687,048 - ABIE53_000629 0.21 -1.5 687,048 - ABIE53_000629 0.21 -1.2 687,048 - ABIE53_000629 0.21 +0.7 687,048 - ABIE53_000629 0.21 -0.8 687,048 - ABIE53_000629 0.21 -0.6 687,188 + ABIE53_000629 0.35 -1.3 687,188 + ABIE53_000629 0.35 -0.6 687,188 + ABIE53_000629 0.35 +0.4 687,189 - ABIE53_000629 0.35 -1.5 687,189 - ABIE53_000629 0.35 -0.6 687,189 - ABIE53_000629 0.35 -1.0 687,377 + ABIE53_000629 0.54 +0.4 687,377 + ABIE53_000629 0.54 -2.3 687,378 - ABIE53_000629 0.54 -1.3 687,389 + ABIE53_000629 0.55 -3.0 687,389 + ABIE53_000629 0.55 -1.9 687,389 + ABIE53_000629 0.55 -0.6 687,389 + ABIE53_000629 0.55 -0.2 687,389 + ABIE53_000629 0.55 +3.3 687,389 + ABIE53_000629 0.55 -0.0 687,390 - ABIE53_000629 0.55 -1.4 687,390 - ABIE53_000629 0.55 -0.0 687,390 - ABIE53_000629 0.55 -0.2 687,390 - ABIE53_000629 0.55 -0.6 687,390 - ABIE53_000629 0.55 -0.5 687,390 - ABIE53_000629 0.55 +0.1 687,398 + ABIE53_000629 0.56 -0.4 687,496 - ABIE53_000629 0.65 -2.4
Or see this region's nucleotide sequence