Experiment: Pyruvate (fermenting) with Na2S as sulfur source + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0038 and DVU0039 are separated by 211 nucleotides DVU0039 and DVU0040 are separated by 179 nucleotides DVU0040 and DVU0041 are separated by 192 nucleotides
DVU0038: DVU0038 - acyltransferase domain protein (TIGR), at 43,678 to 45,528
DVU0038
DVU0039: DVU0039 - C4-type zinc finger protein, DksA/TraR family (TIGR), at 45,740 to 46,270
DVU0039
DVU0040: DVU0040 - hypothetical protein (TIGR), at 46,450 to 47,064
DVU0040
DVU0041: DVU0041 - transglycosylase, SLT family (TIGR), at 47,257 to 49,020
DVU0041
Position (kb) 45
46
47 Strain fitness (log2 ratio) -2
-1
0
1
2 at 44.766 kb on + strand, within DVU0038 at 44.768 kb on + strand, within DVU0038 at 44.773 kb on + strand, within DVU0038 at 44.773 kb on + strand, within DVU0038 at 44.807 kb on + strand, within DVU0038 at 44.836 kb on + strand, within DVU0038 at 44.957 kb on - strand, within DVU0038 at 44.980 kb on - strand, within DVU0038 at 45.060 kb on - strand, within DVU0038 at 45.101 kb on - strand, within DVU0038 at 45.101 kb on - strand, within DVU0038 at 45.211 kb on - strand, within DVU0038 at 45.211 kb on - strand, within DVU0038 at 45.211 kb on - strand, within DVU0038 at 45.326 kb on - strand, within DVU0038 at 45.330 kb on + strand, within DVU0038 at 45.358 kb on + strand at 45.369 kb on - strand at 45.385 kb on + strand at 45.393 kb on - strand at 45.405 kb on - strand at 45.427 kb on + strand at 45.427 kb on - strand at 45.444 kb on + strand at 45.452 kb on - strand at 45.605 kb on + strand at 45.605 kb on + strand at 45.672 kb on - strand at 45.680 kb on - strand at 45.687 kb on + strand at 45.733 kb on + strand at 45.750 kb on + strand at 45.753 kb on - strand at 45.850 kb on + strand, within DVU0039 at 45.964 kb on - strand, within DVU0039 at 45.992 kb on - strand, within DVU0039 at 46.060 kb on - strand, within DVU0039 at 46.062 kb on + strand, within DVU0039 at 46.070 kb on - strand, within DVU0039 at 46.070 kb on - strand, within DVU0039 at 46.119 kb on + strand, within DVU0039 at 46.130 kb on + strand, within DVU0039 at 46.138 kb on - strand, within DVU0039 at 46.138 kb on - strand, within DVU0039 at 46.150 kb on + strand, within DVU0039 at 46.165 kb on + strand, within DVU0039 at 46.165 kb on + strand, within DVU0039 at 46.165 kb on + strand, within DVU0039 at 46.173 kb on - strand, within DVU0039 at 46.173 kb on - strand, within DVU0039 at 46.173 kb on - strand, within DVU0039 at 46.173 kb on - strand, within DVU0039 at 46.173 kb on - strand, within DVU0039 at 46.211 kb on - strand, within DVU0039 at 46.252 kb on - strand at 46.264 kb on + strand at 46.267 kb on - strand at 46.272 kb on - strand at 46.361 kb on - strand at 46.411 kb on + strand at 46.478 kb on + strand at 46.541 kb on + strand, within DVU0040 at 46.554 kb on - strand, within DVU0040 at 46.574 kb on - strand, within DVU0040 at 46.620 kb on + strand, within DVU0040 at 46.620 kb on + strand, within DVU0040 at 46.667 kb on + strand, within DVU0040 at 46.692 kb on - strand, within DVU0040 at 46.728 kb on + strand, within DVU0040 at 46.799 kb on - strand, within DVU0040 at 46.826 kb on + strand, within DVU0040 at 46.833 kb on + strand, within DVU0040 at 46.905 kb on + strand, within DVU0040 at 46.905 kb on + strand, within DVU0040 at 46.905 kb on + strand, within DVU0040 at 46.954 kb on + strand, within DVU0040 at 46.959 kb on + strand, within DVU0040 at 47.002 kb on - strand, within DVU0040 at 47.035 kb on - strand at 47.054 kb on - strand at 47.150 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with Na2S as sulfur source + 0.1% Yeast Extract remove 44,766 + DVU0038 0.59 +1.5 44,768 + DVU0038 0.59 -2.4 44,773 + DVU0038 0.59 -0.3 44,773 + DVU0038 0.59 -0.6 44,807 + DVU0038 0.61 -0.2 44,836 + DVU0038 0.63 +0.1 44,957 - DVU0038 0.69 -1.2 44,980 - DVU0038 0.70 -1.1 45,060 - DVU0038 0.75 -1.9 45,101 - DVU0038 0.77 -0.0 45,101 - DVU0038 0.77 +0.5 45,211 - DVU0038 0.83 +1.9 45,211 - DVU0038 0.83 +0.1 45,211 - DVU0038 0.83 -0.7 45,326 - DVU0038 0.89 +0.1 45,330 + DVU0038 0.89 -0.1 45,358 + -1.6 45,369 - -0.2 45,385 + -0.2 45,393 - -0.9 45,405 - +0.1 45,427 + +0.1 45,427 - -0.6 45,444 + -0.6 45,452 - +0.2 45,605 + -0.2 45,605 + +0.9 45,672 - -0.0 45,680 - -0.3 45,687 + +0.4 45,733 + +0.2 45,750 + -2.6 45,753 - -1.0 45,850 + DVU0039 0.21 +0.1 45,964 - DVU0039 0.42 +0.0 45,992 - DVU0039 0.47 -0.1 46,060 - DVU0039 0.60 -0.1 46,062 + DVU0039 0.61 -0.0 46,070 - DVU0039 0.62 +0.3 46,070 - DVU0039 0.62 -0.0 46,119 + DVU0039 0.71 +1.0 46,130 + DVU0039 0.73 -0.3 46,138 - DVU0039 0.75 +0.1 46,138 - DVU0039 0.75 +0.2 46,150 + DVU0039 0.77 -0.9 46,165 + DVU0039 0.80 +0.3 46,165 + DVU0039 0.80 +1.0 46,165 + DVU0039 0.80 +1.2 46,173 - DVU0039 0.82 +0.9 46,173 - DVU0039 0.82 +1.2 46,173 - DVU0039 0.82 -0.5 46,173 - DVU0039 0.82 +1.2 46,173 - DVU0039 0.82 -0.3 46,211 - DVU0039 0.89 -0.1 46,252 - +0.1 46,264 + +0.0 46,267 - +1.2 46,272 - -0.1 46,361 - -0.5 46,411 + -0.5 46,478 + -0.6 46,541 + DVU0040 0.15 +1.8 46,554 - DVU0040 0.17 -0.1 46,574 - DVU0040 0.20 -0.3 46,620 + DVU0040 0.28 -2.4 46,620 + DVU0040 0.28 -0.0 46,667 + DVU0040 0.35 -1.2 46,692 - DVU0040 0.39 -0.3 46,728 + DVU0040 0.45 +1.4 46,799 - DVU0040 0.57 -0.1 46,826 + DVU0040 0.61 -0.0 46,833 + DVU0040 0.62 -0.6 46,905 + DVU0040 0.74 +0.0 46,905 + DVU0040 0.74 +0.0 46,905 + DVU0040 0.74 -0.2 46,954 + DVU0040 0.82 +0.2 46,959 + DVU0040 0.83 -0.6 47,002 - DVU0040 0.90 -0.3 47,035 - +1.1 47,054 - -0.4 47,150 + +0.2
Or see this region's nucleotide sequence