Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02322 and SMc02323 are separated by 200 nucleotides SMc02323 and SMc02324 are separated by 113 nucleotides
SMc02322: SMc02322 - rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) <small>(from data)</small>, at 691,858 to 693,957
SMc02322
SMc02323: SMc02323 - transcriptional regulator, at 694,158 to 694,970
SMc02323
SMc02324: SMc02324 - periplasmic binding ABC transporter protein, at 695,084 to 696,073
SMc02324
Position (kb) 694
695 Strain fitness (log2 ratio) -2
-1
0
1 at 693.314 kb on + strand, within SMc02322 at 693.560 kb on + strand, within SMc02322 at 693.560 kb on + strand, within SMc02322 at 693.560 kb on + strand, within SMc02322 at 693.560 kb on + strand, within SMc02322 at 693.561 kb on - strand, within SMc02322 at 693.651 kb on - strand, within SMc02322 at 693.663 kb on - strand, within SMc02322 at 693.695 kb on + strand, within SMc02322 at 693.696 kb on - strand, within SMc02322 at 693.696 kb on - strand, within SMc02322 at 693.696 kb on - strand, within SMc02322 at 693.813 kb on + strand at 693.827 kb on + strand at 694.006 kb on + strand at 694.007 kb on - strand at 694.007 kb on - strand at 694.602 kb on + strand, within SMc02323 at 694.621 kb on + strand, within SMc02323 at 694.621 kb on + strand, within SMc02323 at 694.622 kb on - strand, within SMc02323 at 694.622 kb on - strand, within SMc02323 at 694.622 kb on - strand, within SMc02323 at 694.659 kb on + strand, within SMc02323 at 694.660 kb on - strand, within SMc02323 at 695.141 kb on - strand at 695.267 kb on + strand, within SMc02324 at 695.267 kb on + strand, within SMc02324 at 695.268 kb on - strand, within SMc02324 at 695.268 kb on - strand, within SMc02324 at 695.604 kb on - strand, within SMc02324 at 695.621 kb on + strand, within SMc02324 at 695.622 kb on - strand, within SMc02324 at 695.622 kb on - strand, within SMc02324 at 695.898 kb on - strand, within SMc02324 at 695.918 kb on + strand, within SMc02324 at 695.918 kb on + strand, within SMc02324 at 695.918 kb on + strand, within SMc02324
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 693,314 + SMc02322 0.69 +0.1 693,560 + SMc02322 0.81 +1.6 693,560 + SMc02322 0.81 -1.8 693,560 + SMc02322 0.81 -0.7 693,560 + SMc02322 0.81 +0.8 693,561 - SMc02322 0.81 -0.5 693,651 - SMc02322 0.85 -0.2 693,663 - SMc02322 0.86 -0.2 693,695 + SMc02322 0.87 +0.2 693,696 - SMc02322 0.88 +0.3 693,696 - SMc02322 0.88 -0.3 693,696 - SMc02322 0.88 -0.7 693,813 + +0.5 693,827 + +1.3 694,006 + +0.3 694,007 - -0.4 694,007 - -0.4 694,602 + SMc02323 0.55 +0.4 694,621 + SMc02323 0.57 +1.3 694,621 + SMc02323 0.57 +0.4 694,622 - SMc02323 0.57 -0.1 694,622 - SMc02323 0.57 +0.4 694,622 - SMc02323 0.57 +0.6 694,659 + SMc02323 0.62 +0.5 694,660 - SMc02323 0.62 +0.6 695,141 - +0.9 695,267 + SMc02324 0.18 -0.3 695,267 + SMc02324 0.18 +0.5 695,268 - SMc02324 0.19 -0.0 695,268 - SMc02324 0.19 -0.4 695,604 - SMc02324 0.53 -0.2 695,621 + SMc02324 0.54 -0.0 695,622 - SMc02324 0.54 -0.5 695,622 - SMc02324 0.54 +0.9 695,898 - SMc02324 0.82 +0.2 695,918 + SMc02324 0.84 -0.3 695,918 + SMc02324 0.84 -0.4 695,918 + SMc02324 0.84 -0.9
Or see this region's nucleotide sequence