Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01104 and SMc01103 are separated by 354 nucleotides SMc01103 and SMc01102 are separated by 105 nucleotides
SMc01104: SMc01104 - chemoreceptor methyl-accepting chemotaxis transmembrane protein, at 450,468 to 452,834
SMc01104
SMc01103: SMc01103 - Ribokinase (EC 2.7.1.15) <small>(from data)</small>, at 453,189 to 454,088
SMc01103
SMc01102: SMc01102 - hypothetical protein, at 454,194 to 455,399
SMc01102
Position (kb) 453
454
455 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 452.210 kb on + strand, within SMc01104 at 452.211 kb on - strand, within SMc01104 at 452.258 kb on - strand, within SMc01104 at 452.305 kb on + strand, within SMc01104 at 452.306 kb on - strand, within SMc01104 at 452.350 kb on + strand, within SMc01104 at 452.393 kb on + strand, within SMc01104 at 452.394 kb on - strand, within SMc01104 at 452.419 kb on + strand, within SMc01104 at 452.485 kb on + strand, within SMc01104 at 452.746 kb on + strand at 452.746 kb on + strand at 452.746 kb on + strand at 452.746 kb on + strand at 452.866 kb on - strand at 452.866 kb on - strand at 452.866 kb on - strand at 452.886 kb on + strand at 452.983 kb on + strand at 452.983 kb on + strand at 452.984 kb on - strand at 453.073 kb on + strand at 453.074 kb on - strand at 453.074 kb on - strand at 453.088 kb on + strand at 453.122 kb on + strand at 453.191 kb on - strand at 453.328 kb on + strand, within SMc01103 at 453.341 kb on + strand, within SMc01103 at 453.341 kb on + strand, within SMc01103 at 453.341 kb on + strand, within SMc01103 at 453.342 kb on - strand, within SMc01103 at 453.360 kb on - strand, within SMc01103 at 453.441 kb on + strand, within SMc01103 at 454.410 kb on + strand, within SMc01102 at 454.411 kb on - strand, within SMc01102 at 454.635 kb on + strand, within SMc01102 at 454.675 kb on + strand, within SMc01102 at 454.676 kb on - strand, within SMc01102 at 454.697 kb on + strand, within SMc01102 at 454.841 kb on + strand, within SMc01102 at 454.841 kb on + strand, within SMc01102 at 454.842 kb on - strand, within SMc01102
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 452,210 + SMc01104 0.74 +0.4 452,211 - SMc01104 0.74 -0.6 452,258 - SMc01104 0.76 +1.0 452,305 + SMc01104 0.78 +1.0 452,306 - SMc01104 0.78 +0.8 452,350 + SMc01104 0.80 +0.5 452,393 + SMc01104 0.81 -0.4 452,394 - SMc01104 0.81 +0.7 452,419 + SMc01104 0.82 -0.9 452,485 + SMc01104 0.85 +0.6 452,746 + -0.2 452,746 + -0.3 452,746 + -2.2 452,746 + +1.1 452,866 - -0.6 452,866 - -0.3 452,866 - -0.6 452,886 + +0.8 452,983 + -0.1 452,983 + -0.3 452,984 - +1.2 453,073 + -0.2 453,074 - +0.0 453,074 - +0.2 453,088 + +0.3 453,122 + -0.1 453,191 - +0.7 453,328 + SMc01103 0.15 -2.3 453,341 + SMc01103 0.17 -2.2 453,341 + SMc01103 0.17 -1.5 453,341 + SMc01103 0.17 +1.1 453,342 - SMc01103 0.17 -2.6 453,360 - SMc01103 0.19 -3.9 453,441 + SMc01103 0.28 -3.5 454,410 + SMc01102 0.18 -0.2 454,411 - SMc01102 0.18 +0.2 454,635 + SMc01102 0.37 -1.5 454,675 + SMc01102 0.40 -0.1 454,676 - SMc01102 0.40 +1.0 454,697 + SMc01102 0.42 -0.1 454,841 + SMc01102 0.54 +0.0 454,841 + SMc01102 0.54 -0.5 454,842 - SMc01102 0.54 +0.5
Or see this region's nucleotide sequence