Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1255 and SMa1256 overlap by 14 nucleotides SMa1256 and SMa1259 are separated by 3 nucleotides SMa1259 and SMa1261 are separated by 45 nucleotides SMa1261 and SMa1262 are separated by 356 nucleotides
SMa1255: SMa1255 - hypothetical protein, at 687,399 to 687,710
SMa1255
SMa1256: SMa1256 - hypothetical protein, at 687,697 to 688,227
SMa1256
SMa1259: SMa1259 - hypothetical protein, at 688,231 to 689,589
SMa1259
SMa1261: SMa1261 - hypothetical protein, at 689,635 to 689,952
SMa1261
SMa1262: SMa1262 - hypothetical protein, at 690,309 to 691,118
SMa1262
Position (kb) 688
689
690 Strain fitness (log2 ratio) -1
0
1
2 at 687.304 kb on + strand at 687.371 kb on + strand at 687.372 kb on - strand at 687.414 kb on - strand at 687.414 kb on - strand at 687.437 kb on - strand, within SMa1255 at 687.458 kb on - strand, within SMa1255 at 687.475 kb on + strand, within SMa1255 at 687.509 kb on - strand at 687.579 kb on + strand, within SMa1255 at 687.579 kb on + strand, within SMa1255 at 687.579 kb on + strand, within SMa1255 at 687.580 kb on - strand, within SMa1255 at 687.580 kb on - strand, within SMa1255 at 687.586 kb on + strand, within SMa1255 at 687.587 kb on - strand, within SMa1255 at 687.587 kb on - strand, within SMa1255 at 687.587 kb on - strand, within SMa1255 at 687.587 kb on - strand, within SMa1255 at 687.587 kb on - strand, within SMa1255 at 687.590 kb on + strand, within SMa1255 at 687.591 kb on - strand, within SMa1255 at 687.591 kb on - strand, within SMa1255 at 687.607 kb on - strand, within SMa1255 at 687.757 kb on - strand, within SMa1256 at 688.021 kb on + strand, within SMa1256 at 688.022 kb on - strand, within SMa1256 at 688.022 kb on - strand, within SMa1256 at 688.022 kb on - strand, within SMa1256 at 688.174 kb on + strand, within SMa1256 at 688.174 kb on + strand, within SMa1256 at 688.174 kb on + strand, within SMa1256 at 688.176 kb on + strand at 688.176 kb on + strand at 688.177 kb on - strand at 688.177 kb on - strand at 688.233 kb on - strand at 688.320 kb on + strand at 688.320 kb on + strand at 688.321 kb on - strand at 688.442 kb on + strand, within SMa1259 at 688.530 kb on - strand, within SMa1259 at 688.565 kb on + strand, within SMa1259 at 688.706 kb on + strand, within SMa1259 at 688.706 kb on + strand, within SMa1259 at 688.707 kb on - strand, within SMa1259 at 688.779 kb on - strand, within SMa1259 at 689.060 kb on + strand, within SMa1259 at 689.060 kb on + strand, within SMa1259 at 689.061 kb on - strand, within SMa1259 at 689.179 kb on - strand, within SMa1259 at 689.230 kb on + strand, within SMa1259 at 689.263 kb on + strand, within SMa1259 at 689.263 kb on + strand, within SMa1259 at 689.591 kb on + strand at 689.592 kb on - strand at 689.592 kb on - strand at 689.592 kb on - strand at 689.726 kb on + strand, within SMa1261 at 689.727 kb on - strand, within SMa1261 at 689.808 kb on + strand, within SMa1261 at 689.808 kb on + strand, within SMa1261 at 689.809 kb on - strand, within SMa1261 at 689.809 kb on - strand, within SMa1261 at 689.997 kb on + strand at 689.997 kb on + strand at 689.997 kb on + strand at 690.243 kb on + strand at 690.243 kb on + strand at 690.336 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 687,304 + -0.3 687,371 + -1.1 687,372 - -0.4 687,414 - +0.5 687,414 - -1.3 687,437 - SMa1255 0.12 +0.9 687,458 - SMa1255 0.19 -0.5 687,475 + SMa1255 0.24 -0.5 687,509 - -0.2 687,579 + SMa1255 0.58 -0.5 687,579 + SMa1255 0.58 +0.6 687,579 + SMa1255 0.58 +0.6 687,580 - SMa1255 0.58 -0.5 687,580 - SMa1255 0.58 +0.4 687,586 + SMa1255 0.60 +0.4 687,587 - SMa1255 0.60 -0.5 687,587 - SMa1255 0.60 -0.3 687,587 - SMa1255 0.60 -0.5 687,587 - SMa1255 0.60 +0.1 687,587 - SMa1255 0.60 +0.3 687,590 + SMa1255 0.61 -1.2 687,591 - SMa1255 0.62 -1.3 687,591 - SMa1255 0.62 +0.2 687,607 - SMa1255 0.67 -0.0 687,757 - SMa1256 0.11 +0.7 688,021 + SMa1256 0.61 -1.3 688,022 - SMa1256 0.61 +0.2 688,022 - SMa1256 0.61 -0.2 688,022 - SMa1256 0.61 +0.7 688,174 + SMa1256 0.90 +0.6 688,174 + SMa1256 0.90 +1.0 688,174 + SMa1256 0.90 +1.8 688,176 + -0.4 688,176 + +0.4 688,177 - -0.0 688,177 - +0.2 688,233 - +0.2 688,320 + -0.3 688,320 + -0.8 688,321 - +0.4 688,442 + SMa1259 0.16 -0.7 688,530 - SMa1259 0.22 +1.2 688,565 + SMa1259 0.25 -0.0 688,706 + SMa1259 0.35 +0.2 688,706 + SMa1259 0.35 -0.3 688,707 - SMa1259 0.35 +0.1 688,779 - SMa1259 0.40 +1.0 689,060 + SMa1259 0.61 +0.7 689,060 + SMa1259 0.61 +0.3 689,061 - SMa1259 0.61 +0.4 689,179 - SMa1259 0.70 +0.4 689,230 + SMa1259 0.74 -0.2 689,263 + SMa1259 0.76 +0.4 689,263 + SMa1259 0.76 +0.8 689,591 + -0.5 689,592 - -0.1 689,592 - +0.4 689,592 - -0.4 689,726 + SMa1261 0.29 +0.1 689,727 - SMa1261 0.29 -0.7 689,808 + SMa1261 0.54 +0.4 689,808 + SMa1261 0.54 +0.1 689,809 - SMa1261 0.55 +0.1 689,809 - SMa1261 0.55 +0.5 689,997 + +0.2 689,997 + -0.4 689,997 + -1.3 690,243 + +0.7 690,243 + +0.1 690,336 - -0.2
Or see this region's nucleotide sequence